DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8850 and Slc6a2

DIOPT Version :10

Sequence 1:NP_725122.2 Gene:CG8850 / 36331 FlyBaseID:FBgn0033708 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_112633.2 Gene:Slc6a2 / 83511 RGDID:621822 Length:617 Species:Rattus norvegicus


Alignment Length:556 Identity:201/556 - (36%)
Similarity:305/556 - (54%) Gaps:27/556 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 NDGISTVIYSAEGEELTINCEAESESSGQRDQWSRGVEFLFSCIALSVGLGNVWRFPFIALENGG 92
            ::|:..::.|.:|:            :..|:.|.:.::||.|.:..:|.|.||||||::..:|||
  Rat    39 HNGVQCLLASQDGD------------AQPRETWGKKIDFLLSVVGFAVDLANVWRFPYLCYKNGG 91

  Fly    93 GAFLIPYVIVLLLIGRPVYYLEVIIGQFSSRGCIRAFDMAPIMRGIAYGQVYSTALATTYYACIM 157
            |||||||.:.|::.|.|::|:|:.:|||:..|....:.:.|..:|:.|..:........||..|:
  Rat    92 GAFLIPYTLFLIIAGMPLFYMELALGQFNREGAATVWKICPFFKGVGYAVILIALYVGFYYNVII 156

  Fly   158 ALTIRYLVASFSEVLPWTYCLVEWGK-SCV---ATGATAANDS---SIVQGVSSAELFFTQTVLR 215
            |.::.||.|||:..||||.|...|.. :|.   ...|:...|.   |..:...:|| |:.:.||.
  Rat   157 AWSLYYLFASFTLNLPWTNCGHAWNSPNCTDPKLLNASVLGDHTKYSKYKFTPAAE-FYERGVLH 220

  Fly   216 EPESLDDNGLGTPSWDLVLCLLATWVIIGTILSKGIRSSGKASYFLALFPYVIMIVLLIRAVTLP 280
            ..||...:.:|.|.|.|:|||:...|::...|.||:::|||..:..|..||.::.|||:..||||
  Rat   221 LHESSGIHDIGLPQWQLLLCLMVVIVVLYFSLWKGVKTSGKVVWITATLPYFVLFVLLVHGVTLP 285

  Fly   281 GAWQGIVYFLKPQWSQLLNPHVWYAAITQMFFSLAICFGTLVMYASFNDFNKNVHKDVIIITTID 345
            ||..||..:|...:.:|....||..|.||:||||...||.|:.:||:|.|:.|.::|.::.:||:
  Rat   286 GASNGINAYLHIDFYRLKEATVWIDAATQIFFSLGAGFGVLIAFASYNKFDNNCYRDALLTSTIN 350

  Fly   346 SLTSILAGCIIFGILGNLAFETNTKDISQVVKGGAGLAFISYPEAIAKFKYLPQLFAVLFFFMLL 410
            .:||.::|..||.|||.:|.|...| |..|...||||.|:.|||||:.... ...:|||||.|||
  Rat   351 CVTSFISGFAIFSILGYMAHEHKVK-IEDVATEGAGLVFVLYPEAISTLSG-STFWAVLFFLMLL 413

  Fly   411 VLGIGSNIGMASAVVNVVKDRFTHLP-HWLLAVSASIIG-FLCGLVYMTPGGQFVLNLVDFYGCT 473
            .||:.|::|...||:..:.|.|..|. |..|...|..:| ||..:..:|.||.:||.|:|.:...
  Rat   414 ALGLDSSMGGMEAVITGLADDFQVLKRHRKLFTCAVTLGTFLLAMFCITKGGIYVLTLLDTFAAG 478

  Fly   474 FIALVLAIAELLAVGWIYGVKRICSDIEFMLNVKTSFYWRICWAIVAPGLMFLVLVYMLFSYEPL 538
            ...|...:.|.:.|.|.|||.|..:||:.|:..|...|||:||..|:|..:..|:|..:.:::||
  Rat   479 TSILFAVLMEAIGVSWFYGVDRFSNDIQQMMGFKPGLYWRLCWKFVSPAFLLFVVVVSIINFKPL 543

  Fly   539 TYRGVQYPPVYYMAGWIIWGLGVLQLPFWALVTIYQ 574
            ||....|||   .|.|:.||:.:..:.......||:
  Rat   544 TYDDYVYPP---WANWVGWGIALSSMILVPAYVIYK 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8850NP_725122.2 SLC6sbd 58..532 CDD:271359 184/482 (38%)
Slc6a2NP_112633.2 SLC5-6-like_sbd 56..615 CDD:444915 198/527 (38%)

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