DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8850 and slc6a5

DIOPT Version :9

Sequence 1:NP_725122.2 Gene:CG8850 / 36331 FlyBaseID:FBgn0033708 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_031756248.1 Gene:slc6a5 / 100495275 XenbaseID:XB-GENE-993852 Length:789 Species:Xenopus tropicalis


Alignment Length:644 Identity:229/644 - (35%)
Similarity:349/644 - (54%) Gaps:57/644 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MQGAQGSREGHPGSND------------GISTVIYSAEGEEL----TINCEAESESSGQRDQWSR 62
            :|.|:|......|.|.            ..|||:...:|...    |:|.:.|.:.:..|..||.
 Frog   124 LQSAEGETNQGFGKNSLEQNNAKGGWVPSQSTVVLGTDGNTSVFPGTLNGDEEGDENKARGNWSS 188

  Fly    63 GVEFLFSCIALSVGLGNVWRFPFIALENGGGAFLIPYVIVLLLIGRPVYYLEVIIGQFSSRGCIR 127
            .::|:.|.:..:||||||||||::|.:||||||||||:.:|.|.|.|::|:||.:|||:|:|.|.
 Frog   189 KLDFILSMVGYAVGLGNVWRFPYLAFKNGGGAFLIPYLTMLALAGLPIFYMEVALGQFASQGPIS 253

  Fly   128 AFDMAPIMRGIAYGQVYSTALATTYYACIMALTIRYLVASFSEVLPWTYCLVEWG---------- 182
            .:...|.::|.....:..:.|...||..||..||.||.||...||||..|...|.          
 Frog   254 VWKAIPALQGCGIAMLIISVLIAIYYNIIMCYTIFYLFASLVSVLPWASCTNPWNTPDCKDKDRL 318

  Fly   183 --KSCVATG------------ATAANDSSIV--------QGVSSAELFFTQTVLREPESLDDNGL 225
              .||:...            .||..:.::|        ..||.:|.:|...:|:....::..  
 Frog   319 MLDSCIIGSQPNIHIKNSTFCMTAYPNLTLVNFTSHANKSFVSGSEEYFKYNMLKISAGIEYP-- 381

  Fly   226 GTPSWDLVLCLLATWVIIGTILSKGIRSSGKASYFLALFPYVIMIVLLIRAVTLPGAWQGIVYFL 290
            |...|.|.:||...|.|:...|:|||:||||..||.|.||||::::||||.||||||..||.:|:
 Frog   382 GEIRWPLAICLFLAWTIVYASLAKGIKSSGKVVYFTATFPYVVLVILLIRGVTLPGAGDGIWWFI 446

  Fly   291 KPQWSQLLNPHVWYAAITQMFFSLAICFGTLVMYASFNDFNKNVHKDVIIITTIDSLTSILAGCI 355
            .|:|.:|::..||..|.||:||||:..:|.|:..:|:|.|:.||::|.:|:|..:|.|||.||.:
 Frog   447 MPKWEKLMDAMVWKDAATQIFFSLSAAWGGLITLSSYNKFHNNVYRDTLIVTCTNSATSIFAGFV 511

  Fly   356 IFGILGNLAFETNTKDISQVVKGGAGLAFISYPEAIAKFKYLPQLFAVLFFFMLLVLGIGSNIGM 420
            ||.::|.:|...|. ||.:|...|.|:||:.||||:.:....| .:|::||.|||.||:.:....
 Frog   512 IFSVIGFMAHILNV-DIEKVADQGPGIAFVVYPEALTRLPLSP-FWAIIFFLMLLTLGLDTMFAT 574

  Fly   421 ASAVVNVVKDRFTHL--PHW-LLAVSASIIGFLCGLVYMTPGGQFVLNLVDFYGCTFIALVLAIA 482
            ...:|..|.|.|..|  ||. |..:...:..|:.|...:|.||.::|.|||.|..::..:::||.
 Frog   575 IETIVTSVSDEFPKLLRPHKPLFTLICCVAFFIMGFPMITQGGIYMLQLVDNYAASYSLVIIAIF 639

  Fly   483 ELLAVGWIYGVKRICSDIEFMLNVKTSFYWRICWAIVAPGLMFLVLVYMLFSYEPLTYRGVQYPP 547
            ||:.:.::||::|.|.|||.|:..:.|.:|::|||.|.|.::..:|.:..:.:||:||....||.
 Frog   640 ELVGISYVYGLQRFCEDIEMMIGFQPSRFWKVCWAFVTPTILTFILCFSFYQWEPMTYGSYHYPT 704

  Fly   548 VYYMAGWIIWGLGVLQLPFWALVTIYQQPGKTFGSKFGLAMQPTANWGP-LQTQKFEAY 605
            ...:.||::....|:.:|...::.:|..|| ||..:..|...|..:||| |...:.|.|
 Frog   705 WSMVMGWLMLACSVIWIPVMFVIKMYLAPG-TFIERLKLVCSPQPDWGPFLAKHRGERY 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8850NP_725122.2 SLC6sbd 58..532 CDD:271359 193/508 (38%)
slc6a5XP_031756248.1 SLC6sbd_GlyT2 183..779 CDD:271389 217/585 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

Return to query results.
Submit another query.