DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cam and cmlc1

DIOPT Version :10

Sequence 1:NP_523710.1 Gene:Cam / 36329 FlyBaseID:FBgn0000253 Length:149 Species:Drosophila melanogaster
Sequence 2:NP_571767.2 Gene:cmlc1 / 64671 ZFINID:ZDB-GENE-030522-1 Length:196 Species:Danio rerio


Alignment Length:147 Identity:60/147 - (40%)
Similarity:92/147 - (62%) Gaps:7/147 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 EQIAEFKEAFSLFDK--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT--IDFPE 68
            :||.||::||:|||:  .|:..|...:.|.|||:||.|||.|::..::.:..|:...|  :||..
Zfish    50 DQIEEFRDAFTLFDETPTGEMKIRYAQCGDVMRALGHNPTNADVLTVLGKPKAEEMNTKYLDFET 114

  Fly    69 FLTMMAR--KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
            ||.|:..  :.||..:.|:..|..|||||:|||.:..||||||:..||||:|::|||.::...: 
Zfish   115 FLPMLQHISRAKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEDEVDRLMAGQE- 178

  Fly   132 DGDGQVNYEEFVTMMTS 148
            |.:|.:||..|:..:.|
Zfish   179 DANGCINYTSFIKHILS 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CamNP_523710.1 PTZ00184 1..149 CDD:185504 60/147 (41%)
cmlc1NP_571767.2 PTZ00184 48..195 CDD:185504 59/145 (41%)

Return to query results.
Submit another query.