DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cam and myl10

DIOPT Version :9

Sequence 1:NP_001246276.1 Gene:Cam / 36329 FlyBaseID:FBgn0000253 Length:149 Species:Drosophila melanogaster
Sequence 2:NP_001017871.1 Gene:myl10 / 550569 ZFINID:ZDB-GENE-050417-421 Length:167 Species:Danio rerio


Alignment Length:142 Identity:49/142 - (34%)
Similarity:82/142 - (57%) Gaps:5/142 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFL 70
            :.||.||||||::.|::.||.|...:|.....:||: |....||.:|:.|    .:|.|:|..||
Zfish    22 QSQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRLNVGNDELDEMLKE----ASGPINFTIFL 82

  Fly    71 TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 135
            :|...|:|.||.||.|..||::||.:|.|.:...|:::.:.:..:|.|:.||::|.....:|..|
Zfish    83 SMFGEKLKGTDPEETILNAFKIFDPEGTGILKGEEIKYHLMSQVDKFTEAEVNQMFTNFPLDVAG 147

  Fly   136 QVNYEEFVTMMT 147
            .::|:....::|
Zfish   148 NLDYKNLCYVIT 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CamNP_001246276.1 PTZ00184 1..149 CDD:185504 49/142 (35%)
myl10NP_001017871.1 FRQ1 13..163 CDD:227455 49/142 (35%)
EFh 27..85 CDD:298682 23/61 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.