DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cam and myl12b

DIOPT Version :10

Sequence 1:NP_523710.1 Gene:Cam / 36329 FlyBaseID:FBgn0000253 Length:149 Species:Drosophila melanogaster
Sequence 2:NP_001004813.1 Gene:myl12b / 448060 XenbaseID:XB-GENE-991019 Length:172 Species:Xenopus tropicalis


Alignment Length:146 Identity:66/146 - (45%)
Similarity:90/146 - (61%) Gaps:7/146 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
            |.||   .||.||||||::.|::.||.|..::|..::.||.:|||:..|..|:||..    |.|:
 Frog    25 MFDQ---SQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLEKNPTDEYLDAMMNEAP----GPIN 82

  Fly    66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130
            |..||||...|:..||.|:.||.||..||::|.|.|....||.::|.:|::.|||||||:.|||.
 Frog    83 FTMFLTMFGEKLNGTDPEDVIRNAFACFDEEGIGSIQEDTLRELLTTMGDRFTDEEVDELFREAP 147

  Fly   131 IDGDGQVNYEEFVTMM 146
            ||..|..||.||..::
 Frog   148 IDKKGNFNYNEFTRIL 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CamNP_523710.1 PTZ00184 1..149 CDD:185504 66/146 (45%)
myl12bNP_001004813.1 PTZ00184 25..163 CDD:185504 66/144 (46%)

Return to query results.
Submit another query.