DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cam and pvalb9

DIOPT Version :9

Sequence 1:NP_001246276.1 Gene:Cam / 36329 FlyBaseID:FBgn0000253 Length:149 Species:Drosophila melanogaster
Sequence 2:NP_891983.1 Gene:pvalb9 / 360209 ZFINID:ZDB-GENE-030805-4 Length:109 Species:Danio rerio


Alignment Length:95 Identity:27/95 - (28%)
Similarity:51/95 - (53%) Gaps:6/95 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL---GEKLT 118
            |.....:..:.:|..:.....|   :.:|:::.||:.|:|.:|||..|||:..:...   ...||
Zfish    18 DCQAPDSFCYKKFFQLCGLSQK---TPQEVKDVFRIIDEDNSGFIEEAELKFFLQRFFPGARTLT 79

  Fly   119 DEEVDEMIREADIDGDGQVNYEEFVTMMTS 148
            ::|:..::..||.|.||::..:||.||::|
Zfish    80 EKEIKSLLTAADDDSDGRIGVDEFQTMVSS 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CamNP_001246276.1 PTZ00184 1..149 CDD:185504 27/95 (28%)
pvalb9NP_891983.1 EFh 43..108 CDD:238008 23/64 (36%)
EF-hand_7 44..107 CDD:290234 21/62 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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