DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cam and Ocm

DIOPT Version :9

Sequence 1:NP_001246276.1 Gene:Cam / 36329 FlyBaseID:FBgn0000253 Length:149 Species:Drosophila melanogaster
Sequence 2:XP_006248914.1 Gene:Ocm / 25503 RGDID:3222 Length:129 Species:Rattus norvegicus


Alignment Length:83 Identity:25/83 - (30%)
Similarity:43/83 - (51%) Gaps:7/83 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREAD 130
            |.|....||    |..::::.||..|.|.:|::...||::.:...   ..:||:.|...::..||
  Rat    51 FQTSGLSKM----SASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAAD 111

  Fly   131 IDGDGQVNYEEFVTMMTS 148
            .||||::..:||..|:.|
  Rat   112 NDGDGKIGADEFQEMVHS 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CamNP_001246276.1 PTZ00184 1..149 CDD:185504 25/83 (30%)
OcmXP_006248914.1 EFh 63..128 CDD:238008 19/64 (30%)
EF-hand_7 64..127 CDD:290234 18/62 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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