DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cam and rcvrn.1

DIOPT Version :9

Sequence 1:NP_001246276.1 Gene:Cam / 36329 FlyBaseID:FBgn0000253 Length:149 Species:Drosophila melanogaster
Sequence 2:XP_002937040.1 Gene:rcvrn.1 / 100302393 XenbaseID:XB-GENE-973335 Length:202 Species:Xenopus tropicalis


Alignment Length:111 Identity:26/111 - (23%)
Similarity:54/111 - (48%) Gaps:22/111 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76
            :|:..:|.|..|.|                   .:|..:.:....|::.:||:||.|:  |:|..
 Frog    48 QFEGIYSKFFPDAD-------------------PKAYARHVFRSFDSNNDGTLDFKEY--MIALH 91

  Fly    77 MKDT-DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 121
            |..: .:.:::..||.::|.||||.|:.:|:..::|.:.:.:..|:
 Frog    92 MTSSGKANQKLEWAFSLYDVDGNGTINKSEVLEIITAIFKMINTED 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CamNP_001246276.1 PTZ00184 1..149 CDD:185504 26/111 (23%)
rcvrn.1XP_002937040.1 FRQ1 14..182 CDD:227455 26/111 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53747
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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