DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vha36-2 and VMA8

DIOPT Version :9

Sequence 1:NP_610753.1 Gene:Vha36-2 / 36328 FlyBaseID:FBgn0033706 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_010863.1 Gene:VMA8 / 856659 SGDID:S000000777 Length:256 Species:Saccharomyces cerevisiae


Alignment Length:248 Identity:80/248 - (32%)
Similarity:132/248 - (53%) Gaps:18/248 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IFPSRANSVIMKQRVLAARRGVGLLKRKRDAIDMKLRELRRIRFDQDMHGDEAMRNAIFSMAKAN 73
            :||:|....:||.::..|.:|..|||||.:|:..:.|::.:...|........|:.|.||:|:.:
Yeast     8 VFPTRMTLGLMKTKLKGANQGYSLLKRKSEALTKRFRDITKRIDDAKQKMGRVMQTAAFSLAEVS 72

  Fly    74 -LLGADFKPQMVSRSHVATVSLRRTEIKIVGVKLNTLE--LETKGVGAFPLAGLSCGGMQVSRIR 135
             ..|.:...|:......|...:|..:..:.||.|:..|  ::.: :..|.|.||..||.||.|.:
Yeast    73 YATGENIGYQVQESVSTARFKVRARQENVSGVYLSQFESYIDPE-INDFRLTGLGRGGQQVQRAK 136

  Fly   136 DSYTKALKALVEFASLEYQVRMLEAASLQTNMRVNALEHVVIPILQNTYNYICGELEEFEREDFY 200
            :.|::|::.|||.|||:....:|:.....||.||||:|||:||..:||..||..||:|.:||:||
Yeast   137 EIYSRAVETLVELASLQTAFIILDEVIKVTNRRVNAIEHVIIPRTENTIAYINSELDELDREEFY 201

  Fly   201 RLKRSQAKQLEAKMAFTELIKTKNMTDEELETYIKRNINQTRPPAADTPFDQE 253
            |||:.|.|:             :|.| .:|:..:|...::....|::...|:|
Yeast   202 RLKKVQEKK-------------QNET-AKLDAEMKLKRDRAEQDASEVAADEE 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha36-2NP_610753.1 ATP-synt_D 18..206 CDD:280060 68/190 (36%)
PEHE <253..>294 CDD:291924 1/1 (100%)
DUF4628 <281..>373 CDD:292069
VMA8NP_010863.1 V_ATPase_subD 5..213 CDD:129409 73/218 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346431
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1394
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S324
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101069
Panther 1 1.100 - - O PTHR11671
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.650

Return to query results.
Submit another query.