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Protein Alignment SmF and LSM1
DIOPT Version :10
| Sequence 1: | NP_523708.2 |
Gene: | SmF / 36314 |
FlyBaseID: | FBgn0000426 |
Length: | 88 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_012411.1 |
Gene: | LSM1 / 853318 |
SGDID: | S000003660 |
Length: | 172 |
Species: | Saccharomyces cerevisiae |
| Alignment Length: | 70 |
Identity: | 19/70 - (27%) |
| Similarity: | 32/70 - (45%) |
Gaps: | 5/70 - (7%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 19 KPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGE-----VLIRCNNVLYIKGME 78
:.:.|.|:.|:...|.|.:.|.|.|:.|.:..|.|..|......| .:||..||:.:..::
Yeast 52 RKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENVVMLGEVD 116
Fly 79 DDDEE 83
.|.|:
Yeast 117 IDKED 121
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SmF | NP_523708.2 |
Sm_F |
8..76 |
CDD:212469 |
17/61 (28%) |
| LSM1 | NP_012411.1 |
LSm1 |
40..115 |
CDD:212475 |
17/62 (27%) |
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