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Protein Alignment SmF and lsm-8
DIOPT Version :10
| Sequence 1: | NP_523708.2 |
Gene: | SmF / 36314 |
FlyBaseID: | FBgn0000426 |
Length: | 88 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_500964.1 |
Gene: | lsm-8 / 177393 |
WormBaseID: | WBGene00003082 |
Length: | 98 |
Species: | Caenorhabditis elegans |
| Alignment Length: | 79 |
Identity: | 23/79 - (29%) |
| Similarity: | 34/79 - (43%) |
Gaps: | 15/79 - (18%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 13 LNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEE----VIEGSVTGNLGEVLIRCNNVLY 73
:|.:||. |:...|.|...|..:|:.:.:..| ..||.:|..||..:||..||..
Worm 13 VNVVTGD--------GRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAI 69
Fly 74 IKGMEDDDEEGEMR 87
| .:.|||.:.|
Worm 70 I---GEIDEELDKR 80
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SmF | NP_523708.2 |
Sm_F |
8..76 |
CDD:212469 |
19/66 (29%) |
| lsm-8 | NP_500964.1 |
LSm8 |
3..91 |
CDD:212474 |
23/79 (29%) |
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