Protein Alignment SmF and lsm-1

DIOPT Version :10

• Sequence 1: NP_523708.2
• Gene: SmF / 36314
• FlyBaseID: FBgn0000426
• Length: 88
• Species: Drosophila melanogaster
• Sequence 2: NP_496385.1
• Gene: lsm-1 / 174700
• WormBaseID: WBGene00003076
• Length: 125
• Species: Caenorhabditis elegans
• Alignment Length: 89
• Identity: 30/89 - (33%)
• Similarity: 44/89 - (49%)
• Gaps: 17/89 - (19%)

  Fly     9 PKPFLNGLTG------KPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSV-------TGN 60
            |.|:|.|...      |.:||.|:.|::..|||.|:|.:.|:.|   |:|:|.:.       ||.
 Worm     4 PDPYLPGAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLIL---EDVVERTFVEKYFCETGQ 65

  Fly    61 LGEVLIRCNNVLYIKGMEDDDEEG 84
             |.:|||..||.....::|..|.|
 Worm    66 -GFMLIRGENVELAGEIDDTIETG 88

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SmF	NP_523708.2	Sm_F	8..76	CDD:212469	27/79 (34%)
lsm-1	NP_496385.1	LSm1	8..81	CDD:212475	25/76 (33%)