DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmF and fat3

DIOPT Version :10

Sequence 1:NP_523708.2 Gene:SmF / 36314 FlyBaseID:FBgn0000426 Length:88 Species:Drosophila melanogaster
Sequence 2:XP_031753199.1 Gene:fat3 / 100493675 XenbaseID:XB-GENE-979369 Length:4613 Species:Xenopus tropicalis


Alignment Length:22 Identity:12/22 - (54%)
Similarity:13/22 - (59%) Gaps:5/22 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LTGKP----VLVKL-KWGQEYK 32
            |||.|    :|||. ||..|||
 Frog   306 LTGDPLDQFILVKEGKWINEYK 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmFNP_523708.2 Sm_F 8..76 CDD:212469 12/22 (55%)
fat3XP_031753199.1 Cadherin_repeat 49..155 CDD:206637
Cadherin_repeat 164..264 CDD:206637
Cadherin_repeat 382..470 CDD:206637
Cadherin_repeat 479..576 CDD:206637
Cadherin_repeat 594..674 CDD:206637
Cadherin_repeat 735..829 CDD:206637
Cadherin_repeat 837..933 CDD:206637
Cadherin_repeat 942..1020 CDD:206637
Cadherin_repeat 1051..1146 CDD:206637
Cadherin_repeat 1154..1252 CDD:206637
Cadherin_repeat 1260..1350 CDD:206637
Cadherin_repeat 1369..1481 CDD:206637
Cadherin_repeat 1490..1587 CDD:206637
Cadherin_repeat 1596..1687 CDD:206637
Cadherin_repeat 1700..1790 CDD:206637
Cadherin_repeat 1798..1904 CDD:206637
Cadherin_repeat 1923..1998 CDD:206637
Cadherin_repeat 2012..2105 CDD:206637
Cadherin_repeat 2113..2204 CDD:206637
Cadherin_repeat 2216..2308 CDD:206637
Cadherin_repeat 2316..2415 CDD:206637
Cadherin_repeat 2423..2515 CDD:206637
Cadherin_repeat 2525..2621 CDD:206637
Cadherin_repeat 2629..2724 CDD:206637
Cadherin_repeat 2737..2835 CDD:206637
Cadherin_repeat 2844..2945 CDD:206637
Cadherin_repeat 2953..3050 CDD:206637
Cadherin_repeat 3060..3152 CDD:206637
Cadherin_repeat 3160..3257 CDD:206637
Cadherin_repeat 3266..3362 CDD:206637
Cadherin_repeat 3370..3467 CDD:206637
Cadherin_repeat 3476..3567 CDD:206637
Cadherin_repeat 3581..3663 CDD:206637
Laminin_G_2 3890..4019 CDD:460494
EGF_CA 4048..4083 CDD:238011
EGF_CA 4082..4121 CDD:238011
EGF_CA 4123..4158 CDD:238011
Blue background indicates that the domain is not in the aligned region.

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