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Protein Alignment SmD3 and LSM4
DIOPT Version :10
| Sequence 1: | NP_725106.1 |
Gene: | SmD3 / 36306 |
FlyBaseID: | FBgn0023167 |
Length: | 151 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_011037.3 |
Gene: | LSM4 / 856848 |
SGDID: | S000000914 |
Length: | 187 |
Species: | Saccharomyces cerevisiae |
| Alignment Length: | 82 |
Identity: | 22/82 - (26%) |
| Similarity: | 40/82 - (48%) |
Gaps: | 11/82 - (13%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 5 VPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQIT-------VTYRD----GRTANL 58
:|:.:|..|:|..:..|...||:.:|.|...::.||..::.:| :...| .:...|
Yeast 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKL 66
Fly 59 ENVYIRGSKIRFLILPD 75
..:||||:.|:|:.|.|
Yeast 67 NEIYIRGTFIKFIKLQD 83
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SmD3 | NP_725106.1 |
Sm_D3 |
6..75 |
CDD:212468 |
21/79 (27%) |
| LSM4 | NP_011037.3 |
LSm4 |
2..87 |
CDD:212470 |
22/82 (27%) |
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