DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD3 and Snrpd3

DIOPT Version :9

Sequence 1:NP_725106.1 Gene:SmD3 / 36306 FlyBaseID:FBgn0023167 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_080371.1 Gene:Snrpd3 / 67332 MGIID:1914582 Length:126 Species:Mus musculus


Alignment Length:123 Identity:99/123 - (80%)
Similarity:102/123 - (82%) Gaps:6/123 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRG 65
            |||||||||||||||||:||||.||||||||||||||||||||:.|||||||||.|.||.|||||
Mouse     1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRG 65

  Fly    66 SKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQ--ARGRGRGGPPGGGRG 121
            |||||||||||||||||.|....|..|..|||||||||:||  ||||||    |.|||
Mouse    66 SKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGR----GMGRG 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD3NP_725106.1 Sm_D3 6..75 CDD:212468 61/68 (90%)
Snrpd3NP_080371.1 Sm_D3 6..75 CDD:212468 61/68 (90%)
5 X 2 AA tandem repeats of [RM]-G 110..119 7/12 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832131
Domainoid 1 1.000 119 1.000 Domainoid score I5807
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3078
Inparanoid 1 1.050 190 1.000 Inparanoid score I3883
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53728
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004370
OrthoInspector 1 1.000 - - oto92251
orthoMCL 1 0.900 - - OOG6_102085
Panther 1 1.100 - - LDO PTHR23338
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1359
SonicParanoid 1 1.000 - - X3092
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.790

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