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Protein Alignment SmD3 and Lsm5
DIOPT Version :9
Sequence 1: | NP_725106.1 |
Gene: | SmD3 / 36306 |
FlyBaseID: | FBgn0023167 |
Length: | 151 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_079796.1 |
Gene: | Lsm5 / 66373 |
MGIID: | 1913623 |
Length: | 91 |
Species: | Mus musculus |
Alignment Length: | 73 |
Identity: | 15/73 - (20%) |
Similarity: | 32/73 - (43%) |
Gaps: | 14/73 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 IGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNC---QMTQITVTYRDGRTANLENVYIR 64
||..|.::.:::..|: |.|:..:|.:|. .:|:..:|....|...|:.:.:.
Mouse 22 IGSRIHIVMKSDKEIV-----------GTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLN 75
Fly 65 GSKIRFLI 72
|:.|..|:
Mouse 76 GNNITMLV 83
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD3 | NP_725106.1 |
Sm_D3 |
6..75 |
CDD:212468 |
13/70 (19%) |
Lsm5 | NP_079796.1 |
LSm5 |
11..86 |
CDD:212479 |
15/73 (21%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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