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Protein Alignment SmD3 and CG17768
DIOPT Version :9
Sequence 1: | NP_725106.1 |
Gene: | SmD3 / 36306 |
FlyBaseID: | FBgn0023167 |
Length: | 151 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001027236.1 |
Gene: | CG17768 / 3772012 |
FlyBaseID: | FBgn0032240 |
Length: | 154 |
Species: | Drosophila melanogaster |
Alignment Length: | 154 |
Identity: | 46/154 - (29%) |
Similarity: | 67/154 - (43%) |
Gaps: | 23/154 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 VPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYIRGSKI 68
:|:.:|..|:.|.:..|...||.|.|.|:..:..||..:..:..|.:|| |...:...|||||.|
Fly 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTI 66
Fly 69 RFLILP----DMLKNAPMFKK----QTGKGLGGTAGRGKAAILRAQARGRGRGGPPGGG--RGTG 123
::|.:| ||:|.....|. :..|..||.:.:.: |||.|||| ...|
Fly 67 KYLRIPDEVIDMVKEDAQAKSRNRTEMNKNRGGNSSQNQ------------RGGRPGGGNRNNVG 119
Fly 124 GPPGAPGGSGGRGAWQGGPTGGRG 147
..||...|.....|.:.|...|:|
Fly 120 NRPGQGYGGAANNAMRLGGAAGQG 143
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD3 | NP_725106.1 |
Sm_D3 |
6..75 |
CDD:212468 |
24/73 (33%) |
CG17768 | NP_001027236.1 |
LSm4 |
2..77 |
CDD:212470 |
24/74 (32%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
1 |
0.930 |
- |
- |
|
C45460806 |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.840 |
|
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