DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD3 and CG9344

DIOPT Version :9

Sequence 1:NP_725106.1 Gene:SmD3 / 36306 FlyBaseID:FBgn0023167 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_611528.1 Gene:CG9344 / 37372 FlyBaseID:FBgn0034564 Length:79 Species:Drosophila melanogaster


Alignment Length:63 Identity:16/63 - (25%)
Similarity:31/63 - (49%) Gaps:2/63 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTAN-LENVYIRGSKIRFL 71
            :::..|..:..:...|..|||.|...:..||..:.| |..|.:|:..| ..:.:|||:.:.::
  Fly    11 INQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQ-TEEYVNGQLKNKYGDAFIRGNNVLYI 72

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD3NP_725106.1 Sm_D3 6..75 CDD:212468 16/63 (25%)
CG9344NP_611528.1 LSm6 8..73 CDD:212473 16/63 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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