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Protein Alignment SmD3 and SmB
DIOPT Version :9
Sequence 1: | NP_725106.1 |
Gene: | SmD3 / 36306 |
FlyBaseID: | FBgn0023167 |
Length: | 151 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001188780.1 |
Gene: | SmB / 34426 |
FlyBaseID: | FBgn0262601 |
Length: | 199 |
Species: | Drosophila melanogaster |
Alignment Length: | 129 |
Identity: | 38/129 - (29%) |
Similarity: | 44/129 - (34%) |
Gaps: | 43/129 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 61 VYIRGSKIRFLIL------PDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQARG-----RGRGG 114
|.:||..|..|.: .:.|...|:.....|.|:|..||||....|.|...| ||.||
Fly 70 VLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPINLSAVPAGLQGPVRGVGG 134
Fly 115 P--------------------PGGGRGTGGPPGAPGGSGGRGA-----------WQGGPTGGRG 147
| |..|...||.|..||.. |||| .:|.|..|||
Fly 135 PAQQHMAPMGRGVPRAPMMGAPPPGMIPGGMPSMPGNM-GRGAPPPMRGPPPSMIRGAPPPGRG 197
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD3 | NP_725106.1 |
Sm_D3 |
6..75 |
CDD:212468 |
5/19 (26%) |
SmB | NP_001188780.1 |
Sm_B |
5..82 |
CDD:212464 |
5/11 (45%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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