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Protein Alignment SmD3 and Snrpd1
DIOPT Version :9
Sequence 1: | NP_725106.1 |
Gene: | SmD3 / 36306 |
FlyBaseID: | FBgn0023167 |
Length: | 151 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001099633.1 |
Gene: | Snrpd1 / 291794 |
RGDID: | 1306345 |
Length: | 119 |
Species: | Rattus norvegicus |
Alignment Length: | 123 |
Identity: | 41/123 - (33%) |
Similarity: | 56/123 - (45%) |
Gaps: | 17/123 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFL 71
:|:.||. :|.|...|....|.:...:.:||..:..:.:|.::.....||.:.|||:.||:.
Rat 8 MKLSHET----VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYF 68
Fly 72 ILPDMLKNAPMF----KKQTGKGLGGTAGRGKAAILRAQARGRGRGGPPGGGRGTGGP 125
||||.|....:. .|...|.....|||| ||||||...|.|||.|||
Rat 69 ILPDSLPLDTLLVDVEPKVKSKKREAVAGRG---------RGRGRGRGRGRGRGRGGP 117
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD3 | NP_725106.1 |
Sm_D3 |
6..75 |
CDD:212468 |
19/67 (28%) |
Snrpd1 | NP_001099633.1 |
Sm_D1 |
2..93 |
CDD:212471 |
24/88 (27%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.810 |
|
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