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Protein Alignment SmD3 and lsm5
DIOPT Version :9
Sequence 1: | NP_725106.1 |
Gene: | SmD3 / 36306 |
FlyBaseID: | FBgn0023167 |
Length: | 151 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_596373.1 |
Gene: | lsm5 / 2540723 |
PomBaseID: | SPBC20F10.09 |
Length: | 80 |
Species: | Schizosaccharomyces pombe |
Alignment Length: | 72 |
Identity: | 14/72 - (19%) |
Similarity: | 32/72 - (44%) |
Gaps: | 7/72 - (9%) |
- Green bases have known domain annotations that are detailed below.
Fly 5 VPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQI----TVTYRDGRTANLENVYIRG 65
:|::::.:..|..:.....:...:.|.|:..:|.:|..:..: ||| |.|.....:.:.|
pombe 6 LPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT---GVTEKHSEMLLNG 67
Fly 66 SKIRFLI 72
:.:..||
pombe 68 NGMCMLI 74
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD3 | NP_725106.1 |
Sm_D3 |
6..75 |
CDD:212468 |
14/71 (20%) |
lsm5 | NP_596373.1 |
LSm5 |
4..77 |
CDD:212479 |
14/72 (19%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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