DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD3 and lsm5

DIOPT Version :9

Sequence 1:NP_725106.1 Gene:SmD3 / 36306 FlyBaseID:FBgn0023167 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_596373.1 Gene:lsm5 / 2540723 PomBaseID:SPBC20F10.09 Length:80 Species:Schizosaccharomyces pombe


Alignment Length:72 Identity:14/72 - (19%)
Similarity:32/72 - (44%) Gaps:7/72 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQI----TVTYRDGRTANLENVYIRG 65
            :|::::.:..|..:.....:...:.|.|:..:|.:|..:..:    |||   |.|.....:.:.|
pombe     6 LPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT---GVTEKHSEMLLNG 67

  Fly    66 SKIRFLI 72
            :.:..||
pombe    68 NGMCMLI 74

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD3NP_725106.1 Sm_D3 6..75 CDD:212468 14/71 (20%)
lsm5NP_596373.1 LSm5 4..77 CDD:212479 14/72 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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