DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD3 and lsm4

DIOPT Version :10

Sequence 1:NP_725106.1 Gene:SmD3 / 36306 FlyBaseID:FBgn0023167 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_001342832.1 Gene:lsm4 / 2540475 PomBaseID:SPBC30D10.06 Length:121 Species:Schizosaccharomyces pombe


Alignment Length:118 Identity:36/118 - (30%)
Similarity:55/118 - (46%) Gaps:8/118 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG-RTANLENVYIRGSKI 68
            :|:.:|:..:|..|..|...||.:.|.|...::.||..:.::..|..|| :...|...||||:.|
pombe     2 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNI 66

  Fly    69 RFLILPD-MLKNAPMFKKQTGKGLG------GTAGRGKAAILRAQARGRGRGG 114
            ::|.:.| :|......:.|..:..|      |..|||.........|||||||
pombe    67 KYLRIQDEVLSQVAKQQAQQRENRGSRFRGRGQRGRGNYGHTAPNRRGRGRGG 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD3NP_725106.1 Sm_D3 6..75 CDD:212468 21/69 (30%)
lsm4NP_001342832.1 LSm4 2..77 CDD:212470 22/74 (30%)

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