DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD3 and lsm-6

DIOPT Version :9

Sequence 1:NP_725106.1 Gene:SmD3 / 36306 FlyBaseID:FBgn0023167 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_001379827.1 Gene:lsm-6 / 190601 WormBaseID:WBGene00003080 Length:77 Species:Caenorhabditis elegans


Alignment Length:67 Identity:18/67 - (26%)
Similarity:33/67 - (49%) Gaps:2/67 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTAN-LENVYIRGSKIR 69
            |.:.|.:..|..:..:..:|..|||.|...:..||..:.| |..|.:|:..| ..:.:|||:.:.
 Worm     7 PAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQ-TEEYSNGQLQNKYGDAFIRGNNVL 70

  Fly    70 FL 71
            ::
 Worm    71 YI 72

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD3NP_725106.1 Sm_D3 6..75 CDD:212468 18/67 (27%)
lsm-6NP_001379827.1 LSm6 6..73 CDD:212473 18/67 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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