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Protein Alignment SmD3 and lsm-5
DIOPT Version :9
Sequence 1: | NP_725106.1 |
Gene: | SmD3 / 36306 |
FlyBaseID: | FBgn0023167 |
Length: | 151 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001366865.1 |
Gene: | lsm-5 / 180047 |
WormBaseID: | WBGene00003079 |
Length: | 91 |
Species: | Caenorhabditis elegans |
Alignment Length: | 74 |
Identity: | 19/74 - (25%) |
Similarity: | 33/74 - (44%) |
Gaps: | 16/74 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 IGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYR---DG-RTANLENVYI 63
||..|.|:.:.:..|: .|:|| .:|.:|..:..: |.|. || |...|:.:.:
Worm 22 IGSKIWVIMKNDKEIV--GTLTG---------FDDYVNMVLEDV-VEYENTADGKRMTKLDTILL 74
Fly 64 RGSKIRFLI 72
.|:.|..|:
Worm 75 NGNHITMLV 83
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD3 | NP_725106.1 |
Sm_D3 |
6..75 |
CDD:212468 |
17/71 (24%) |
lsm-5 | NP_001366865.1 |
LSm5 |
11..86 |
CDD:212479 |
19/74 (26%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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