DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8878 and vrk3

DIOPT Version :9

Sequence 1:NP_001260913.1 Gene:CG8878 / 36302 FlyBaseID:FBgn0027504 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001013586.1 Gene:vrk3 / 541443 ZFINID:ZDB-GENE-030131-246 Length:459 Species:Danio rerio


Alignment Length:679 Identity:134/679 - (19%)
Similarity:208/679 - (30%) Gaps:298/679 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SARKRKRSAV-----KAAEKRQRLSGGSSSANGF----------EFHENDDEESCS--------- 55
            |:||||.|.:     :.|:|.|.:...:.....|          :..|.|:.:..:         
Zfish    42 SSRKRKSSQLVKEEEEVAKKTQSILSQTPDKTSFTPPRKGKASPQIKEQDEIKQTNLSTLQTPDK 106

  Fly    56 -SAGSAAGTEADPPTLLHTPQARSLLLTGASIASDHNNSSVMESPRPVYTLRPSVVNGTILRDVL 119
             |:.|....:|.|  |:...:|:.   |..:|.|    .|..:|.:.|.::.| |:.||::.|..
Zfish   107 MSSMSLQKYKASP--LIKDEEAKK---TSPAIQS----PSKCKSKKRVSSVDP-VLEGTVVCDQS 161

  Fly   120 SKAWRLGRPIGKGNFGEIFLASDDTVCPAS----SETAKYVVKIEPHSNGPLFVEIHCLINTSRN 180
            .|.|:|...:.|......:     .||.|:    |:..||::::.. ..|.||.|.:..:..:: 
Zfish   162 GKKWKLIELLWKTELDVTY-----GVCQANQHAESDECKYMLRLGA-KEGHLFNEQNFHLRAAK- 219

  Fly   181 NDLSDAAEDAASLPAPQTHVLSRGPPSGIPSFIASGTHYFGDVRYRFLVLPRFDRDLHSLIK--N 243
               .||.|....|     |.|..   .||||.:..|.|    ..|||||.|...:.|.:.:.  .
Zfish   220 ---PDAVEKWGKL-----HKLDF---LGIPSCVGFGLH----ETYRFLVFPCMGQPLQTELDEGT 269

  Fly   244 SRVQQKSLLVLAVHIINVLENLHDKGYCHNDIKAQNLMVSKCKYLRRQVVPKGNGYEDHYEEKQQ 308
            ..:.:|::|.||:.:::.||.:|:|.|.|.||.|.|:                            
Zfish   270 GSLSEKNVLQLALRLLDSLEFIHEKEYAHADIHAGNI---------------------------- 306

  Fly   309 TTDSGNSSEQETNDDDYFLKSEKFALKKIVDIKQDEDEDDEDFDDGATSNSNNSNSLDVFHTPVN 373
                             ::||..                                     ||   
Zfish   307 -----------------YIKSSS-------------------------------------HT--- 314

  Fly   374 KKRSARNAIQFSGSNPVRACRREKRNSMYEEMVKSHYLRPTKRISYREEFNEDGYPKETAENSDE 438
                                                                             
Zfish   315 ----------------------------------------------------------------- 314

  Fly   439 SPESSDNESDEFIPPSSRRSVIKRGRSAQIATPKKTPVSTRASRQEKVKKEPNGDQKLRSRGSKH 503
                                                                             
Zfish   315 ----------------------------------------------------------------- 314

  Fly   504 LDNNPTEYKFLPTEEEHVFLIDFGLASKFQDRGVHRPFIMDQRRAHDGTLEFTSRDAHLGA-HSR 567
                            .|||..||.|.:|...|.|..:....|.||.|.:.|.|.|:|.|| .||
Zfish   315 ----------------EVFLSGFGHAFRFCPGGKHVEYRQGSRTAHQGNISFISLDSHKGAGPSR 363

  Fly   568 RSDLECLGYNLLYWSEGYLPWKDVAQQQQQEKVHRAKELFMTDVPEMLRQFY-GKQVPKYLGEFL 631
            ||||:.|||.:|.|..|.|||..::  .....|...||.:|:|||.:|...| .|:....|.|:|
Zfish   364 RSDLQSLGYCMLCWMTGSLPWSHLS--HNSSSVAAEKERYMSDVPGLLTYCYKQKKASSALQEYL 426

  Fly   632 LQIGQLAYQERPNYERYRKIFKREYQRLG 660
            ..:..|.|.|:|:|...:...::..|::|
Zfish   427 CNVMALQYTEKPDYTLLKGGLQQSLQKMG 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8878NP_001260913.1 PKc_like 112..>286 CDD:304357 50/179 (28%)
SPS1 123..>284 CDD:223589 46/166 (28%)
SPS1 <491..756 CDD:223589 54/172 (31%)
PKc_like <517..652 CDD:304357 52/136 (38%)
vrk3NP_001013586.1 DUF4758 <9..>104 CDD:292572 12/61 (20%)
PK_VRK3 154..451 CDD:271026 106/551 (19%)
SPS1 236..>384 CDD:223589 63/382 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D371612at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11909
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
65.880

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