DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8878 and gish

DIOPT Version :9

Sequence 1:NP_001260913.1 Gene:CG8878 / 36302 FlyBaseID:FBgn0027504 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster


Alignment Length:885 Identity:144/885 - (16%)
Similarity:239/885 - (27%) Gaps:424/885 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 EKRQR-LSGGSSSANGFEFHENDDEESCSSAGSAAGTEADPPTLLHTPQARSLLLTGASIASDHN 91
            ::|:| .|||....              ::||.:||..|:..|.|            |...|..|
  Fly     2 QRRERQASGGGPQT--------------TTAGPSAGNVANATTAL------------AGGKSSSN 40

  Fly    92 NSSVMESPRPVYTLRPSVVNGT-ILRDVLSKAWRLGRPIGKGNFGEIFLASDDTVCPASSETAKY 155
            |         :|:.|.||...| :|  ::...:|:|:.||.|||||:.|..:      .......
  Fly    41 N---------MYSTRQSVSTTTGVL--MVGPNFRVGKKIGCGNFGELRLGKN------LYNNEHV 88

  Fly   156 VVKIEPHSNGPLFVEIHCLINTSRNNDLSDAAEDAASLPAPQTHVLSR----------GPPSGIP 210
            .:|:||..:                             .|||.|:..|          ..|.|||
  Fly    89 AIKMEPMKS-----------------------------KAPQLHLEYRFYKLLGSHADNAPDGIP 124

  Fly   211 SFIASGTHYFGDVRYRFLVLPRFDRDLHSL--IKNSRVQQKSLLVLAVHIINVLENLHDKGYCHN 273
            .....||  .|. ||..:||......|..|  |...:...|::|::|..:::.:|.:|.:...:.
  Fly   125 RIYHLGT--CGG-RYNAMVLELLGLSLEDLFNICARKFSLKTVLMIAKQLLHRIEYVHSRHLIYR 186

  Fly   274 DIKAQNLMVSKCKYLRRQVVPKGNGYEDHYEEKQQTTDSGNSSEQETNDDDYFLKSEKFALKKIV 338
            |:|.:|.::                                                        
  Fly   187 DVKPENFLI-------------------------------------------------------- 195

  Fly   339 DIKQDEDEDDEDFDDGATSNSNNSNSLDVFHTPVNKKRSARNAIQFSGSNPVRACRREKRNSMYE 403
                           |.||                                              
  Fly   196 ---------------GRTS---------------------------------------------- 199

  Fly   404 EMVKSHYLRPTKRISYREEFNEDGYPKETAENSDESPESSDNESDEFIPPSSRRSVIKRGRSAQI 468
                      |||                                                    
  Fly   200 ----------TKR---------------------------------------------------- 202

  Fly   469 ATPKKTPVSTRASRQEKVKKEPNGDQKLRSRGSKHLDNNPTEYKFLPTEEEHVFLIDFGLASKFQ 533
                           ||:                                  :.:||||||.::.
  Fly   203 ---------------EKI----------------------------------IHIIDFGLAKEYI 218

  Fly   534 DRGVHRPFIMDQRRAHDGTLEFTSRDAHLG-AHSRRSDLECLGYNLLYWSEGYLPWKDVAQQQQQ 597
            |...:|.....:.::..||..:.|.:.|:| ..|||.|||.||:..:|:..|.|||:.:.....:
  Fly   219 DLDTNRHIPYREHKSLTGTARYMSINTHMGREQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLK 283

  Fly   598 EKVHRAKELFMTDVPEMLRQFYGKQVPKYLGEFLLQIGQLAYQERPNYERYRKIFKREYQRLGYD 662
            |:..:..:.......|:|...:    |:....:|..:.:|.:.|.|:|:..|::|:..:.|.||.
  Fly   284 ERYQKIGDTKRATPIEVLCDGH----PEEFATYLRYVRRLDFFETPDYDFLRRLFQDLFDRKGYT 344

  Fly   663 PCQMRLSSEEILRTCVSTKDVVDGSKCDIFELNNKAAVNVMRNSTLSTPFQE----HSLTNRVSP 723
            .                     :|.    |:...|         |:|||...    |.:.  :||
  Fly   345 D---------------------EGE----FDWTGK---------TMSTPVGSLQTGHEVI--ISP 373

  Fly   724 KNLRSKSNKKTTKK--KFSWAEVLSQDPDQIARERAVKEFEREETICPLESRLPRRYEGKPTYAI 786
            ...|.....||..|  ..:|.:|                                   .||...:
  Fly   374 NKDRHNVTAKTNAKGGVAAWPDV-----------------------------------PKPGATL 403

  Fly   787 LDMEQRRREKGLVVQEHIEEEEEDADEDDEEENQEAMDIDQEEDGEAADSA---------EGEDE 842
            .::....|...:.|   :.....:.:.||.........|.|:.:.|..|..         :.:..
  Fly   404 GNLTPADRHGSVQV---VSSTNGELNPDDPTAGHSNTPITQQPEVEVVDETKCCCFFKRKKKKST 465

  Fly   843 SDRSMEGSDCSDHSQKRARGRPKGTSRKQTTSRQAQPHQN 882
            ..:.::|..||             ..|:..|..:|..|.|
  Fly   466 RQKXLDGVQCS-------------PEREAVTLLRATSHSN 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8878NP_001260913.1 PKc_like 112..>286 CDD:304357 42/186 (23%)
SPS1 123..>284 CDD:223589 40/172 (23%)
SPS1 <491..756 CDD:223589 56/271 (21%)
PKc_like <517..652 CDD:304357 36/135 (27%)
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 90/587 (15%)
S_TKc 62..335 CDD:214567 84/542 (15%)
CK1gamma_C 354..428 CDD:289378 18/122 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11909
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.