DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and smyd4

DIOPT Version :9

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001070062.1 Gene:smyd4 / 767654 ZFINID:ZDB-GENE-060929-248 Length:753 Species:Danio rerio


Alignment Length:670 Identity:158/670 - (23%)
Similarity:264/670 - (39%) Gaps:153/670 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QDWKLIGIISGKFNELK--ENHRKVDFVMRALIDFKYIEKIFLNVTLRED--------------K 63
            |||  :..:..|:.||:  |..|     ...|.|...|....|::...||              |
Zfish     6 QDW--VCHVEQKWAELRSEETER-----FSLLTDIDAIFNYGLSLICPEDLNILSRISEKFSVKK 63

  Fly    64 CNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYAEPNSEHLSIGYANRSAVLFEWKRYRQCL 128
            ..:.:.|||..||..|.:|  :|..|:..|:|.:|:|:.|::.||:.||||||.||....|:.||
Zfish    64 SPETASEFRQQGNLSFKVK--DYPAAVLHYSKGVCHADKNTDELSLCYANRSAALFYQGLYQACL 126

  Fly   129 DNIKLARQANYPARLSHKLDKRERDCQ-QLLDQQPPDVVPYEFKLSFEPHAQ----VPFIADCLE 188
            ::|:.:.:|.||:.|..||..|:..|| ||...:.|::...:.:||  |..:    ...::|.:.
Zfish   127 EDIRRSLEAGYPSHLQDKLQTRQTACQNQLRKAEKPNIPHTDHQLS--PCQKTVNSTGHLSDGVS 189

  Fly   189 LRETAAEGRFVVTNRDLAVGDLVSVEEPFCSTLL-----------------TPMRYIRCATCKRE 236
            :..::.:||.::...:...|::|..:|.:||.|:                 |..|:  |..|..:
Zfish   190 VYFSSDKGRHMLVMENKPAGEVVLEDEAYCSVLIPANIFNTGTNKAVETFGTEDRH--CHHCLSQ 252

  Fly   237 NYLTLIPCDSCCSTMFCSEECKSIAMQTYHRYECPI-IDFLNRMFNKIHCIALRTTLVA--LNIF 298
            : |:.:||..|....:|.|.|:..|...:|::|||: .|.|  ....:..:|||..|.|  ..:.
Zfish   253 S-LSFVPCPKCSYARYCGESCQKDAWDQWHQWECPVGADLL--AIGVLGHLALRVVLKAGQTEVQ 314

  Fly   299 PSIEELIDFCEQEQNQD--------KCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDLFQRSV 355
            ..|:...|.....:|..        .|...|::.:......|..|:.|:.:....|.:..|..::
Zfish   315 MGIKNTKDHVTTYKNDSPVQLSLGGDCGKSLDHTDCFHGSSYMGIYSLLPHVAQHSPASRFLMAI 379

  Fly   356 VCAVLKHFIIEYTPVKEYLG-GEEGV--------NFFTDLLFRHLQTSPSNMHGIDLVEQVNETK 411
            ..||:...:....|..:::. .:|||        :.......||:.....|...|..| :|.|..
Zfish   380 TMAVIYGKLQGGPPPNKWMSFKDEGVKASWQPEMSMLGATALRHMMQLRCNAQAITAV-RVKEES 443

  Fly   412 DDQTHSS-------GAYAFLSLINHSCAPNTVRIY----------------------EGTKAYMF 447
            .....||       ..:..|||:||||:|||...:                      :|:::.:.
Zfish   444 GMAVQSSSEIRIATAIFPVLSLLNHSCSPNTSISFTTGFQPDPHNQLGCSEGHFDHPKGSRSGVT 508

  Fly   448 VL----RPIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGMMPHKATVP 508
            |.    :.:.||..:...||.|.:....::|.:.|..||.|.|.|:.|:.:.........:.|.|
Zfish   509 VTVRASKDLTAGQEILHCYGPHRSRMEVKERQRLLLEQYFFQCVCQACQRDLSEGSPNAKEHTAP 573

  Fly   509 SVTDDTELALSSYNYDFAVSNYRKYCDFLTQYGDDYPC------EQISSA--------------- 552
            .:                  ...|....|..:.|.|.|      .|||||               
Zfish   574 GM------------------KCVKCGKPLQSHTDGYTCSWSSCGHQISSADVQNRLQGFQLLLDE 620

  Fly   553 ------EECLKMALHIMADA 566
                  ::.|..||||:..|
Zfish   621 AVHLMEQDRLNEALHILQSA 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 TPR_11 67..138 CDD:290150 28/70 (40%)
zf-MYND 230..270 CDD:280009 11/39 (28%)
SET 363..463 CDD:279228 27/141 (19%)
smyd4NP_001070062.1 TPR_11 68..134 CDD:290150 28/67 (42%)
TPR repeat 68..96 CDD:276809 11/29 (38%)
TPR repeat 101..134 CDD:276809 15/32 (47%)
zf-MYND 246..285 CDD:280009 11/39 (28%)
SET <456..532 CDD:214614 17/75 (23%)
T6SS_VasJ <603..679 CDD:299836 9/38 (24%)
TPR_12 615..683 CDD:290160 6/26 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I4505
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1278034at2759
OrthoFinder 1 1.000 - - FOG0000542
OrthoInspector 1 1.000 - - otm26456
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5130
SonicParanoid 1 1.000 - - X497
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.860

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