DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and smyd1b

DIOPT Version :10

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001034725.1 Gene:smyd1b / 569027 ZFINID:ZDB-GENE-060522-1 Length:486 Species:Danio rerio


Alignment Length:430 Identity:82/430 - (19%)
Similarity:144/430 - (33%) Gaps:142/430 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 LELRETAAEGRFVVTNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATCKRENYLTLIPCDSCCSTM 251
            :|:.::..:||.:...::...||::..|.||.|.:........|.:|.|... .|..|..|....
Zfish     4 VEVFDSPGKGRGLRATKEAWAGDVLFAEPPFASVVFDSQASSICHSCFRRQE-KLQRCGQCRFAQ 67

  Fly   252 FCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPSIEELIDFCEQEQNQDK 316
            :|.:.|:....:.:                |:.|.|::|                          
Zfish    68 YCDKTCQRAGWEEH----------------KLECAAIKT-------------------------- 90

  Fly   317 CAFDLNYNELTPEEHYRAI----------HGLVTNQHLRSVSDLFQRSVVCAV----LKHFIIEY 367
                  |.: .|.|:.|..          ..:|::..|.::.||  ...:|.:    ||.|.:: 
Zfish    91 ------YGK-PPSENVRLAARILWRMDKQGSVVSDNQLTTLEDL--EDHICDISEDDLKDFKVD- 145

  Fly   368 TPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHGIDLVE-----------QVNETKDDQTHSSGAY 421
                        ::.|.|...|:     |..|.:|.|.           .|::.:..|....|.:
Zfish   146 ------------IHNFLDYWPRN-----SKPHTVDSVSHILGVINCNGFMVSDQRGLQAVGVGLF 193

  Fly   422 AFLSLINHSCAPN-TVRIYEGTKA------------YMFVLRPIKAGNVLYDNYGAHFAICSKEQ 473
            ..|.|:||.|.|| ||.:..|.::            .:..|..|.||..:...|..:..:.:..|
Zfish   194 PNLCLVNHDCWPNCTVILNNGNQSAIDTVFHSQKRIELRALGKISAGEEVTVAYVDYLNVSADRQ 258

  Fly   474 RLKRLSLQYRFDCKCEGC-------------ELNYPMFGMMPHKATVPSVTDDTELALSSYNYDF 525
            ||  |..||.|||.|:.|             |::    |:...:..|..||:.:...|.......
Zfish   259 RL--LKQQYFFDCTCKHCTEKIKDDLKMAGAEVD----GVKVPEEQVKEVTEFSRQKLEKMEKAR 317

  Fly   526 AVSNYRKYCDFLTQYGDDYPCEQISSAEECLKMALHIMAD 565
            ..:||.               |.:....||::...:::||
Zfish   318 IEANYN---------------EVVKICRECVEKQENVLAD 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 SET_SMYD4 180..491 CDD:380934 68/341 (20%)
zf-MYND 230..270 CDD:460312 8/39 (21%)
smyd1bNP_001034725.1 SET_SMYD1 2..276 CDD:380924 69/343 (20%)
zf-MYND 47..85 CDD:460312 9/54 (17%)

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