DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and SmydA-2

DIOPT Version :10

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster


Alignment Length:461 Identity:104/461 - (22%)
Similarity:157/461 - (34%) Gaps:147/461 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 CLELRETAAEGRFVVTNRDLAVGDLVSVEEPFC---STLLTPMRYIRCATCKRE---------NY 238
            |.|:......||.:...||:.:|:.:..|.|..   .....|:    |..|.|.         ||
  Fly    48 CFEIATNEVLGRHLRATRDIKIGEQILKEAPLVLGPKVASAPL----CLGCHRNLLAPGKPRGNY 108

  Fly   239 LTLIPCDSCCSTMFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPSIEE 303
               ..|.| ||...|.:||:.   ..:|:.||.::...|  |..           .:|..|..||
  Fly   109 ---HKCSS-CSWPLCGKECED---SVHHKAECQLMSGSN--FQS-----------KINYVPGEEE 153

  Fly   304 ---------LIDFCEQEQNQDKCAFDLNYNELTPEEHYRAIHGLVTNQHLRSVSDLFQRSVVCAV 359
                     ::..|...:::|..||...||   .|:|.:.          |..:.|:|      |
  Fly   154 RKESAYCVIMLLRCMHLKDKDPDAFLKLYN---LEDHLKE----------RLETPLYQ------V 199

  Fly   360 LKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHGIDLVEQVNETKDDQTHSSGAYAFL 424
            |:..:|.:  :|..||.::........:...|.|:...      |.|..|.:..:....||    
  Fly   200 LRANLITF--IKTVLGMKDWPEMDILRIAAILDTNTFE------VRQPRERRKIRALYPGA---- 252

  Fly   425 SLINHSCAPNTVRIYEGTKAYMFVL-RPIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKC 488
            ::|:|.|.||....::.....:|:. |.|..|.:|..:|..  .:.|..||...|.....|||.|
  Fly   253 AMISHDCVPNMRHRFDDDMNIVFLAKRKIAKGEILSISYTQ--PLRSTIQRRVHLRQAKCFDCSC 315

  Fly   489 EGCE------------------------LNYPMFGMMPHKATVPS--------VTDDTEL----- 516
            ..|:                        || |:....|.|..:.:        ||.|.||     
  Fly   316 ARCQDPEELGSFAGAQTCLKCKAGKIISLN-PLLNSAPWKCQLCNFKRSAKDVVTSDAELQQELE 379

  Fly   517 --------ALSSYNY----DFAVSN----YRKYCDFLTQ-YGD--DYPCEQISS---------AE 553
                    ||..:.|    |...:|    ..||.  ||| ||.  .:..|::|.         .|
  Fly   380 SLDKTTPVALEEFIYRHRADLHETNTHILQAKYA--LTQLYGSAPGFAMEELSGESLNRKLQLCE 442

  Fly   554 ECLKMA 559
            |.||:|
  Fly   443 ELLKLA 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 SET_SMYD4 180..491 CDD:380934 74/326 (23%)
zf-MYND 230..270 CDD:460312 13/48 (27%)
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997 26/102 (25%)
Blue background indicates that the domain is not in the aligned region.

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