DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and SmydA-7

DIOPT Version :9

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001261039.1 Gene:SmydA-7 / 36916 FlyBaseID:FBgn0034182 Length:488 Species:Drosophila melanogaster


Alignment Length:440 Identity:84/440 - (19%)
Similarity:154/440 - (35%) Gaps:125/440 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 GRFVVTNRDLAVGDLVSVEEPFCSTLLTP---MRYIRCATCKRENYLTLIPCDSCCSTMFCSEEC 257
            ||.:|.:..:..||.:..|.|.   |:.|   ...::||.|.:|:|:....|......|.|::  
  Fly    17 GRHLVASIAIEPGDTILEERPL---LVAPHWECHQLKCAQCLQESYVICRRCQVFPLCMDCNQ-- 76

  Fly   258 KSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVALNIFPSIEELIDFCEQEQNQDKCAF--- 319
                   :..:||   :|......|..|   :..||.......:.:|:...|..:.:..|..   
  Fly    77 -------HDEFEC---EFFTSGAGKALC---KDILVKNFGICGLLKLLLLLENPRTKGDCQMLID 128

  Fly   320 -DLNYNELTPEEHYRAIHGLVTNQHLRSVSDLFQRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFF 383
             .:|.::      ||...|: ..:|        :..||..:::..:.:..|.:|         ..
  Fly   129 VPINLSD------YRDGEGM-WQEH--------EELVVRPLMESGLADVLPTQE---------LT 169

  Fly   384 TDLLFRHLQTSPSNMHGIDLVEQVNETKDDQTHSSGAYAFLSLINHSCAPNT-VRIYEGTKAYMF 447
            :|.|..|.....||...:       ..||..| ..|.:.:.:.:.|.|.||| |.:.|.....::
  Fly   170 SDALHAHCIRIDSNSFEV-------TAKDGDT-LKGIFVWGATLPHHCVPNTVVALDEQFNMKLY 226

  Fly   448 VLRPIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGC----ELNYPMFGMMPHKATVP 508
            ...|::.|:::|::|..  .:....||..:|.|..|.:|.|..|    |:...|..:...:....
  Fly   227 AAVPLQPGDIIYNSYTN--PLMGTSQRQHQLRLSRRLECICSRCLDPTEMGTHMSSLKCKECPGF 289

  Fly   509 SVTD-------------------------DTELALSSYNYDFAVSNYRKYCDFLTQYGD------ 542
            ||.:                         :.:.|:.|...| |:.:.:.|...|||||.      
  Fly   290 SVCEIDSNGKLGDWRCPDCRALLTAAEVHELQAAVGSALVD-AMGDLQVYEALLTQYGPLLHPNH 353

  Fly   543 -----------------------DYPCEQISSAEECLKMALHIMADAVPL 569
                                   |.||:::      |...:.:.:|.:|:
  Fly   354 FMLLDIKQNIASILRAAALMNSMDQPCKKL------LARRVELCSDLLPV 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 TPR_11 67..138 CDD:290150
zf-MYND 230..270 CDD:280009 8/39 (21%)
SET 363..463 CDD:279228 21/100 (21%)
SmydA-7NP_001261039.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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