DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and Smyd4

DIOPT Version :10

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001096081.1 Gene:Smyd4 / 319822 MGIID:2442796 Length:799 Species:Mus musculus


Alignment Length:624 Identity:147/624 - (23%)
Similarity:236/624 - (37%) Gaps:149/624 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 DFKYIEKIFLNVTLREDKCNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYAEPNSEHLSIG 110
            |..:::::..:.::.:|  |...:.:|..||.:|  :.:.|..|..||:|.:.::.||:|.:|:.
Mouse    48 DEMFLKELSSSYSVEKD--NDAPLFYREEGNRKF--QEKEYTDAAVLYSKGVSHSRPNTEDISLC 108

  Fly   111 YANRSAVLFEWKRYRQCLDNIKLARQANYPARLSHKLDKRERDC-----------------QQLL 158
            ||||||.||...:|..||.:|..|....||.||..|:..|:.:|                 :..|
Mouse   109 YANRSAALFHLGQYEACLKDIVEAGMHGYPERLQPKMMVRKTECLVNLGRLQEARQTISDLESSL 173

  Fly   159 DQQP---------------------------PDVVPYEFKLSF------EPHAQVPFIADCLELR 190
            ..:|                           |:.:|.....:|      |.:.|:...:..:.|.
Mouse   174 TAKPTLVLSSYQILQRNVQHLKIKIQEKETLPEPIPAALTNAFEDIALGEENTQISGASLSVSLC 238

  Fly   191 ETAAEGRFVVTNRDLAVGDLVSVEEPFCSTLL---TPMRY---------------IRCATCKREN 237
            ....:||.:|..:|:..|:|:..|:.|.|.|:   .|..:               :.|..|.:..
Mouse   239 THPLKGRHLVATKDILPGELLVKEDAFVSVLIPGEMPRPHHCLENKWDTRVTSGDLYCHRCLKHT 303

  Fly   238 YLTLIPCDSCCSTMFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHC-IALRTTLVALNIFPSI 301
             |..:||.||....:||:||...|...||..||.:...|..:  .:.| :|||.||:|.  |..:
Mouse   304 -LATVPCGSCSYAKYCSQECMQQAWDLYHSTECSLGGLLLTL--GVFCHVALRMTLLAR--FEDV 363

  Fly   302 EELID-FCEQEQNQDKC---------AFDLNYNELTPEE-------------------HYRAIHG 337
            :.::. .|::..:.|.|         |||......:.|:                   :|.||..
Mouse   364 DRVVRMLCDEVGSTDTCLPESKNLVKAFDYTSQGESEEKSKIGEPPIPGCNVNGKYGSNYNAIFS 428

  Fly   338 LVTNQHLRSVSDLF----QRSVVCAVLKHFIIEYTPVKEYLGGEEGVNFFTDL------LFRHLQ 392
            |:.:....|....|    ..|.:|..||...::...:|.............||      :.||:.
Mouse   429 LLPHTEKHSPEHRFICAISVSALCRQLKADSVQAQTLKSPKLKAVTPGLCADLTVWGAAMLRHML 493

  Fly   393 TSPSNMHGIDLVEQVNETKDDQTHS------SGAYAFLSLINHSCAPNTVRIYEGTKAYMFVLRP 451
            ....|...|..:......:...|:|      :|.:..:||:||||.|||...:.||.|.:...:.
Mouse   494 QLQCNAQAITSICHTGSNESIITNSRQIRLATGIFPVVSLLNHSCRPNTSVSFTGTVATVRAAQR 558

  Fly   452 IKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGMMPHKATVPSVTDDTEL 516
            |..|..:...||.|.:.....:|.:|||.||.|||:|..|           |..|:.:.......
Mouse   559 IAKGQEILHCYGPHESRMGVAERQQRLSSQYFFDCRCGAC-----------HAETLRAAAAPRWE 612

  Fly   517 ALSSYNYDFAVSNYRKYCDFLTQYGDDYPCEQISSAEEC 555
            |...           |.|..|.|..|...|    |.|.|
Mouse   613 AFCC-----------KTCRALMQGNDVLSC----SNESC 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 SET_SMYD4 180..491 CDD:380934 91/374 (24%)
zf-MYND 230..270 CDD:460312 14/39 (36%)
Smyd4NP_001096081.1 3a0801s09 39..>211 CDD:273380 40/166 (24%)
TPR repeat 68..96 CDD:276809 9/29 (31%)
TPR repeat 101..136 CDD:276809 16/34 (47%)
SET 243..>299 CDD:394802 12/55 (22%)
zf-MYND 296..335 CDD:460312 14/39 (36%)
SET_SMYD4 418..598 CDD:380934 47/179 (26%)
TPR_12 655..725 CDD:315987
Blue background indicates that the domain is not in the aligned region.

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