DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and Smyd4

DIOPT Version :9

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_001099280.1 Gene:Smyd4 / 287525 RGDID:1307369 Length:801 Species:Rattus norvegicus


Alignment Length:659 Identity:153/659 - (23%)
Similarity:250/659 - (37%) Gaps:157/659 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 DFKYIEKIFLNVTLREDKCNKRSVEFRMLGNEQFSLKNRNYFQALELYNKSICYAEPNSEHLSIG 110
            |..:::::..:.::.:|  :...:.:|..||::|  :.:.|..|..||:|.:.::.||:|.:|:.
  Rat    48 DEMFLKQLSSSCSVEKD--SGAPLFYREEGNKRF--QEKEYMGAAVLYSKGVSHSRPNTEDISLC 108

  Fly   111 YANRSAVLFEWKRYRQCLDNIKLARQANYPARLSHKLDKRERDC--------------------- 154
            ||||||.||...::..||.:|..|....||.||..||..|:.:|                     
  Rat   109 YANRSAALFHLGQHEACLKDIVRAGMHGYPERLQPKLMIRKTECLVNLGRLQEARQTISDLENSL 173

  Fly   155 ------------------QQL-LDQQPPDVVPYEFKLSF----------EPHAQVPFIADCLELR 190
                              ||| :..|..:.:|..|..:.          |.:.|:...:..:.|.
  Rat   174 TTKPTLMPSSHQILQRNVQQLKMKIQEKETLPESFPAALTKALEDMALGEENKQISGASLSVSLC 238

  Fly   191 ETAAEGRFVVTNRDLAVGDLVSVEEPFCSTL----LTPMRY--------------IRCATCKREN 237
            ....:||.:|..:|:..|:|:..|:.|.|.|    :.|:|:              :.|..|.|..
  Rat   239 TDPLKGRHLVATKDILPGELLVKEDAFVSVLNPGEMPPLRHCLENKWDTRVTSADLYCHRCLRHT 303

  Fly   238 YLTLIPCDSCCSTMFCSEECKSIAMQTYHRYECPIIDFLNRMFNKIHC-IALRTTLVALNIFPSI 301
             |..:||..|....:||:||...|...||..||.:...|..:  .:.| :|||.||:|.  |..:
  Rat   304 -LATVPCGGCSYAKYCSQECVQQAWDHYHSTECSLGGLLLTL--GVFCHVALRMTLLAR--FEDV 363

  Fly   302 EELI----------DFC-----------------EQEQNQDKCAFDL---NYNELTPEEHYRAIH 336
            :.:|          |.|                 |.|:|.:.|...:   |.|. ..|.:|.|:.
  Rat   364 DRVIRMICDKTGRKDTCLPESKDLVKTFGYTNQGESEENSETCEPSIPGCNVNG-KYENNYDAVL 427

  Fly   337 GLVTNQHLRSVSDLFQRSVVCAVLKHFIIEYTPVKEYLGGEEGV----------NFFTDL----- 386
            .|:.:....|....|    :|||....:..............|:          ...|||     
  Rat   428 SLLPHTEKHSPEHKF----ICAVSVSALCRQLKATSLQAQTTGLKSPRLKAVTPGLCTDLTVWGV 488

  Fly   387 -LFRHLQTSPSNMHGIDLVEQVNETKDDQTHS------SGAYAFLSLINHSCAPNTVRIYEGTKA 444
             :.:|:.....|...|..:......:...|:|      :|.:..:||:||||:|||...:..|.|
  Rat   489 AMLQHMLQLQCNAQAITSICYAGSKESIITNSRQVRLATGVFPVVSLLNHSCSPNTSVSFTSTVA 553

  Fly   445 YMFVLRPIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGCELNYPMFGMMP------- 502
            .:...:.|..|..:...||.|.:.....:|.:|||.||.|||.|..|........:.|       
  Rat   554 TIRAAQQIAKGQEILHCYGPHESRMGVAERQQRLSSQYFFDCSCPACHAETLRAAVAPRWEAFCC 618

  Fly   503 HKATVPSVTDD-----TELALSSYNYDFAVSNYRKYCDFLTQ-------YGDDYPCEQISSAEEC 555
            :...||...:|     .|...:|.:.|..||..:   |...|       ...|.|.:.|....||
  Rat   619 NTCRVPMQGNDVLSCSNESCTNSVSRDRLVSRLQ---DLQQQVHTAQKLLRSDRPEQAIQQLLEC 680

  Fly   556 LKMALHIMA 564
            .:.|.:.::
  Rat   681 QRAAENFLS 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 TPR_11 67..138 CDD:290150 25/70 (36%)
zf-MYND 230..270 CDD:280009 14/39 (36%)
SET 363..463 CDD:279228 23/121 (19%)
Smyd4NP_001099280.1 TPR_11 68..132 CDD:290150 24/65 (37%)
TPR repeat 68..96 CDD:276809 9/29 (31%)
TPR repeat 101..136 CDD:276809 15/34 (44%)
zf-MYND 296..335 CDD:280009 14/39 (36%)
SET <526..572 CDD:279228 14/45 (31%)
TPR_12 692..>748 CDD:290160
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1278034at2759
OrthoFinder 1 1.000 - - FOG0000542
OrthoInspector 1 1.000 - - otm45792
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X497
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.780

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