DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and Smyd2

DIOPT Version :9

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_081072.1 Gene:Smyd2 / 226830 MGIID:1915889 Length:433 Species:Mus musculus


Alignment Length:313 Identity:75/313 - (23%)
Similarity:114/313 - (36%) Gaps:72/313 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 TAAEGRFVVTNRDLAVGDLVSVEEPFCSTLLTPMRYIRCATC--KRENYLTLIPCDSCCSTMFCS 254
            :|.:||.:...|...||||:.....:...|....|...|..|  ::|.   |..|..|....:|.
Mouse    14 SAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEG---LSKCGRCKQAFYCD 75

  Fly   255 EECKSIAMQTYHRYECPIIDFLNRMFNKIHCIALRTTLVA-LNIFPSIEELIDFCEQEQNQDKCA 318
            .||:. .....|:.||..:..|...:|....:.|...::| ..|.|                   
Mouse    76 VECQK-EDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHP------------------- 120

  Fly   319 FDLNYNELTPEEHYRAIHGLVTNQHLRSV----SDLFQRSVVCAVLKHFIIEYTPVKEYLGGEEG 379
                  |.||.|...|:...  ..||..:    .||.|..:  |.|..|..:|            
Mouse   121 ------ERTPSEKLLAVREF--ESHLDKLDNEKKDLIQSDI--AALHQFYSKY------------ 163

  Fly   380 VNFFTDLLFRHLQTSPSNMHGIDLVEQVN----ETKDDQTHSSGAYAF--LSLINHSCAPNTVRI 438
                  |.|      |.:...:.|..|||    ..:|::....|:..|  ::|:||||.||.:..
Mouse   164 ------LEF------PDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVT 216

  Fly   439 YEGTKAYMFVLRPIKAGNVLYDNYGAHFAICSKEQRLKRLSLQYRFDCKCEGC 491
            |:||.|.:..::.|..|:.::.:|  ...:...|.|..||...|.|.|:|..|
Mouse   217 YKGTLAEVRAVQEIHPGDEVFTSY--IDLLYPTEDRNDRLRDSYFFTCECREC 267

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 TPR_11 67..138 CDD:290150
zf-MYND 230..270 CDD:280009 10/41 (24%)
SET 363..463 CDD:279228 25/105 (24%)
Smyd2NP_081072.1 SET_SMYD2 7..269 CDD:380979 75/313 (24%)
S-adenosyl-L-methionine binding. /evidence=ECO:0000250 17..19 0/1 (0%)
zf-MYND 52..90 CDD:396356 10/41 (24%)
Peptide substrate binding. /evidence=ECO:0000250 183..185 0/1 (0%)