DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and set-10

DIOPT Version :9

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_493620.2 Gene:set-10 / 185237 WormBaseID:WBGene00009370 Length:430 Species:Caenorhabditis elegans


Alignment Length:338 Identity:64/338 - (18%)
Similarity:110/338 - (32%) Gaps:134/338 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 VSVEEPFCSTLLTPMRYIRCATCKRE----NYLTLIPCDSCCSTMFCSEECKSIAMQTYHRYECP 271
            |:.|:|..:.|......:.||||..|    ....::.||.|.:..:|:.:|:....::.|::||.
 Worm     4 VAREQPLAAVLSPQFSELYCATCFLEIDSSQETEILTCDDCLAVSYCTLKCQRKDWKSCHQFECE 68

  Fly   272 IIDFLNRMFNKIHC------------IALRTTLVALNI-FPS-----IEELIDFCEQEQNQDKCA 318
            |          :.|            :.:|..|.:.:. .||     :|:|              
 Worm    69 I----------LRCQGSSTPMTLTMKLCIRVLLASRSTQTPSFNGAVLEDL-------------- 109

  Fly   319 FDLNYNEL-TPEEHYRAIHGLVTNQHLRSVSDLFQRS----------------VVCAVLKHFIIE 366
             :.||.|. :..||         ||.|..|..:...|                ::|:||      
 Worm   110 -ETNYKEFRSSPEH---------NQFLSDVLTIISSSGQNIFPTSLETNKTIGIICSVL------ 158

  Fly   367 YTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHGIDLVEQVNETKDDQTHSSGAYAFLSLINHSC 431
                         .|.|:                     .:|| |..:...||.|..::..||||
 Worm   159 -------------CNSFS---------------------IINE-KRVEPIGSGLYVGVAKHNHSC 188

  Fly   432 APNTVRIYEGTKAYM--------------FVLRPIKAGNVLYDNYGAHFAICS----KEQRLKRL 478
            |..:..::||.:.::              :|.|.:..........|.||..|.    |.:.|..:
 Worm   189 ASTSHVVFEGNQVFLRTNQEEYSKELTISYVSRMLPTSERRKTIRGVHFLTCQCEMCKNEELDLI 253

  Fly   479 SLQYRFDCKCEGC 491
            .|..:  |:.:.|
 Worm   254 GLSSK--CRTKNC 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 TPR_11 67..138 CDD:290150
zf-MYND 230..270 CDD:280009 11/43 (26%)
SET 363..463 CDD:279228 17/113 (15%)
set-10NP_493620.2 zf-MYND 23..67 CDD:366792 11/43 (26%)
SET 57..247 CDD:394802 45/264 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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