DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-4 and set-3

DIOPT Version :9

Sequence 1:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster
Sequence 2:NP_499143.1 Gene:set-3 / 182356 WormBaseID:WBGene00007403 Length:465 Species:Caenorhabditis elegans


Alignment Length:347 Identity:76/347 - (21%)
Similarity:122/347 - (35%) Gaps:87/347 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 SFEPHAQVPFIADCLELRETAAEGRFVVTNRDLAVGDLVSVEEPFCSTLLTPMRYIRC------- 230
            ||..:...|.:.|.:.::.....||||....|:.:|.:|.||... :..:.|....||       
 Worm     6 SFRSNEHFPQLCDKVTVKWDKKRGRFVEAIEDIPIGTVVCVETGI-TVNVDPQNCYRCLKITENA 69

  Fly   231 --ATCKRENYLTLIPCDSCCSTMF------CSEECKSIAMQTYHRYECPIIDFLNRMFNKIHCIA 287
              |.||.            |...:      |.|                        |:::....
 Worm    70 SFAYCKN------------CEEFYEPDEIACGE------------------------FDELGIFK 98

  Fly   288 LRTTLVALNIFPSIEELIDFCEQE---------QNQD-KCAFDLNYNELTPEEHYRAIHGLVTNQ 342
            |...||....|..|..|:...:.|         ..|| :..|     :|||              
 Worm    99 LAAHLVFSYPFADIASLVQSSDPEPPSCAPKALSTQDIEAIF-----QLTP-------------- 144

  Fly   343 HLRSVSDLFQRSVVCAVLKHFIIEYTPVKEYLGGEEGVN---FFTDLLFRHLQTSPSNMHGIDLV 404
             ...:.:.|:...:...:|. |:|.....|..|..:.::   .||..|....:.|..|.|.|..:
 Worm   145 -FPEIGEAFKAPAIQNAIKR-IVESLETDENWGRLDQISRTMTFTKALRIMAERSAKNAHTIYSI 207

  Fly   405 EQVNETKDDQTHSSGAYAFLSLINHSCAPNTVRIYEGTKAYMFVLRPIKAGNVLYDNYGAHFAIC 469
            ||:...:|:...::|.:...|:.||||.||....:. ...::||.:.::|...|.|:||..:...
 Worm   208 EQIESQEDNLPMATGLFPISSIFNHSCTPNISGFFV-RNTFIFVSQGVRAREELLDSYGVTYHQH 271

  Fly   470 SKEQRLKRLSLQYRFDCKCEGC 491
            :.|||...|:....|.|.||.|
 Worm   272 TFEQRTNFLASVSGFICHCESC 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-4NP_610730.1 TPR_11 67..138 CDD:290150
zf-MYND 230..270 CDD:280009 7/54 (13%)
SET 363..463 CDD:279228 27/102 (26%)
set-3NP_499143.1 SET <220..271 CDD:214614 15/51 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 64 1.000 Inparanoid score I3964
Isobase 1 0.950 - 0 Normalized mean entropy S6581
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D463653at33208
OrthoFinder 1 1.000 - - FOG0000542
OrthoInspector 1 1.000 - - otm14322
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5130
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.950

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