DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpB and SK16

DIOPT Version :9

Sequence 1:NP_610729.1 Gene:SkpB / 36298 FlyBaseID:FBgn0026176 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_565297.1 Gene:SK16 / 814848 AraportID:AT2G03190 Length:170 Species:Arabidopsis thaliana


Alignment Length:167 Identity:67/167 - (40%)
Similarity:103/167 - (61%) Gaps:14/167 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNSLILKKVLHWATYHKDDPV 68
            |.|.|:|.|.|:.::.:|:..:.|...|:|  |.:|.:: ||.||...||..|:.:...|..|.|
plant     6 IVLTSSDDESFEVEEAVARKLKVIAHMIDD--DCADKAI-PLENVTGNILALVIEYCKKHVLDDV 67

  Fly    69 --------VTEEVENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLNIQGLLDVTCKTVANM 124
                    .|.|..|:|.: :::.:|||:|:| .|..|:.:||||.||||:|.||.:||:|||:.
plant    68 DDSDDSTEATSENVNEEAK-NELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADH 131

  Fly   125 IKGKSPQAIRDTFAIQNDFLPQEEEQVRKENEWC-ED 160
            :|..||:.:|:.|.|:||:.|:||:.:||||.|. ||
plant   132 MKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFED 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpBNP_610729.1 SKP1 1..161 CDD:227528 67/167 (40%)
Skp1 1..110 CDD:214704 40/114 (35%)
Skp1 84..158 CDD:279768 38/74 (51%)
SK16NP_565297.1 SKP1 3..165 CDD:227528 64/162 (40%)
Skp1 3..117 CDD:214704 40/114 (35%)
Skp1 92..165 CDD:279768 38/72 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 51 1.000 Domainoid score I4316
eggNOG 1 0.900 - - E1_COG5201
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 166 1.000 Inparanoid score I1572
OMA 1 1.010 - - QHG54148
OrthoDB 1 1.010 - - D1412723at2759
OrthoFinder 1 1.000 - - FOG0000367
OrthoInspector 1 1.000 - - mtm992
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11165
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X346
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.940

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