DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8888 and Rdh19

DIOPT Version :9

Sequence 1:NP_610724.1 Gene:CG8888 / 36293 FlyBaseID:FBgn0033679 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_671755.2 Gene:Rdh19 / 216453 MGIID:2678390 Length:318 Species:Mus musculus


Alignment Length:291 Identity:91/291 - (31%)
Similarity:147/291 - (50%) Gaps:16/291 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 VW-FALATVGAVLFYHFVK----VS-ASGKGVLITGCEAPLAWYLAKKLDDLGFTVYAGFNTPIE 131
            :| :.::.||......|.:    || ...|.|.||||::.....||::||..|..|.|...|   
Mouse     1 MWLYLVSLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLT--- 62

  Fly   132 ESDEAKILKEVTSGRMKLLHLDVTSEKTILEAARYVSQHLPHGAEGLWSVVHCAH-WIALGELEW 195
             ...|:.|:..||.|::.:.||||..::|:.|.::|.:.:  |..|||.:|:.|. .:.||..:|
Mouse    63 -EKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERV--GNRGLWGLVNNAGISVPLGLSQW 124

  Fly   196 IPFAVLRKSLDLNLLGSARLTQIFLPLVRRAHGRVVFLTSGLNRVPSPVRGIQCATQAAVDCFAA 260
            :........||:||||...:|...|||||:|.||||.::|.:.||.....|..|.::..|:.|:.
Mouse   125 MNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCISKYGVEAFSD 189

  Fly   261 CLRQEMRTRGVDVSVVAAGEFAPGNGWLNETELRDQAKQMWNQLSSEQKKTYGEDYYEAAMTSVE 325
            .||:|:...||.|:::..|.|.  .|..:...|....:.:|:|.|||.::.|||.|....:.|:.
Mouse   190 SLRRELSYFGVKVAIIEPGFFL--TGMASSARLSSNTQMLWDQTSSEIREIYGEKYLAFYLKSLN 252

  Fly   326 KYSRQA-ADIQPTLRVLIDAVTRTFPMARYT 355
            :..::. .|:......:..|:|...|..||:
Mouse   253 ELDKRCNKDLSLVTDCMEHALTACHPRTRYS 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8888NP_610724.1 NADB_Rossmann 96..380 CDD:304358 85/262 (32%)
adh_short 96..293 CDD:278532 68/197 (35%)
Rdh19NP_671755.2 type2_17beta_HSD-like_SDR_c 30..306 CDD:187665 85/262 (32%)
adh_short 30..219 CDD:278532 68/196 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 120 1.000 Domainoid score I5728
eggNOG 1 0.900 - - E1_KOG1610
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 163 1.000 Inparanoid score I4195
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48608
OrthoDB 1 1.010 - - D370032at33208
OrthoFinder 1 1.000 - - FOG0000161
OrthoInspector 1 1.000 - - otm43606
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR43313
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X110
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.980

Return to query results.
Submit another query.