DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8888 and Rdh16

DIOPT Version :9

Sequence 1:NP_610724.1 Gene:CG8888 / 36293 FlyBaseID:FBgn0033679 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_033066.1 Gene:Rdh16 / 19683 MGIID:1201375 Length:317 Species:Mus musculus


Alignment Length:292 Identity:94/292 - (32%)
Similarity:148/292 - (50%) Gaps:19/292 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 VW-FALATVGAVLFYHFVKV-----SASGKGVLITGCEAPLAWYLAKKLDDLGFTVYAGFNTPIE 131
            :| :.:|.||......|.:|     ....|.|.||||::.....||::||..|..|.|...|   
Mouse     1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAACLT--- 62

  Fly   132 ESDEAKILKEVTSGRMKLLHLDVTSEKTILEAARYVSQHLPHGAEGLWSVVHCAHWIAL--GELE 194
             ...|:.|:..||.|::.:.||||..::|:.|.::|.:|:  |..|||.:|:.| .|:.  |..|
Mouse    63 -EKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHV--GNRGLWGLVNNA-GISTPSGPNE 123

  Fly   195 WIPFAVLRKSLDLNLLGSARLTQIFLPLVRRAHGRVVFLTSGLNRVPSPVRGIQCATQAAVDCFA 259
            |:........||:||||...:|...|||||:|.||||.::|.:.|| |...|..|.::..|:.|:
Mouse   124 WMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRV-SLFGGGYCISKYGVEAFS 187

  Fly   260 ACLRQEMRTRGVDVSVVAAGEFAPGNGWLNETELRDQAKQMWNQLSSEQKKTYGEDYYEAAMTSV 324
            ..||:|:...||.|:::..|.|.  .|..:...|....:.:|:|.|||.::.|||.|..:.:..:
Mouse   188 DSLRRELSYFGVKVAIIEPGFFL--TGVTSSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRL 250

  Fly   325 EKYSRQA-ADIQPTLRVLIDAVTRTFPMARYT 355
            .|..::. .|:......:..|:|...|..||:
Mouse   251 NKLDKRCNKDLSGVTDCMEHALTACHPRTRYS 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8888NP_610724.1 NADB_Rossmann 96..380 CDD:304358 88/263 (33%)
adh_short 96..293 CDD:278532 71/198 (36%)
Rdh16NP_033066.1 type2_17beta_HSD-like_SDR_c 30..306 CDD:187665 88/263 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 120 1.000 Domainoid score I5728
eggNOG 1 0.900 - - E1_KOG1610
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 163 1.000 Inparanoid score I4195
Isobase 1 0.950 - 1 Normalized mean entropy S2603
OMA 1 1.010 - - QHG48608
OrthoDB 1 1.010 - - D370032at33208
OrthoFinder 1 1.000 - - FOG0000161
OrthoInspector 1 1.000 - - otm43606
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR43313
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1882
SonicParanoid 1 1.000 - - X110
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.960

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