DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8888 and rdh7.2

DIOPT Version :9

Sequence 1:NP_610724.1 Gene:CG8888 / 36293 FlyBaseID:FBgn0033679 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_001107972.1 Gene:rdh7.2 / 100135028 XenbaseID:XB-GENE-1007886 Length:317 Species:Xenopus tropicalis


Alignment Length:298 Identity:93/298 - (31%)
Similarity:148/298 - (49%) Gaps:32/298 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 KGVLITGCEAPLAWYLAKKLDDLGFTVYAGFNTPIEESDEAKILKEVTSGRMKLLHLDVTSEKTI 160
            |.||||||::.....||:.||..|..|.|...|    ...|:.||:.||.|::.:.||||...::
 Frog    30 KYVLITGCDSGFGNLLARNLDRRGIRVLAACLT----DRGAEELKKQTSDRLQTVLLDVTDSNSV 90

  Fly   161 LEAARYVSQHLPHGAEGLWSVVH-------CAHWIALGELEWIPFAVLRKSLDLNLLGSARLTQI 218
            ..||.:.||.:  |.:|||.:|:       ||      ..||:......|.:::||||...:|..
 Frog    91 KTAANWASQIV--GDKGLWGLVNNAGISFPCA------PNEWLTKEDFMKVMNVNLLGLIDVTIN 147

  Fly   219 FLPLVRRAHGRVVFLTSGLNRVPSPVRGIQCATQAAVDCFAACLRQEMRTRGVDVSVVAAGEFAP 283
            .|.|:|:|.||||.:.|...|:.....| .|.::..|:.|:..||:|||..||.|.:|..|.|  
 Frog   148 MLHLIRKARGRVVNIASVAGRITISGGG-YCMSKYGVESFSDSLRREMRPFGVKVCIVEPGFF-- 209

  Fly   284 GNGWLNETELRDQA-KQMWNQLSSEQKKTYGEDYYE----AAMTSVEKYSRQAADIQPTLRVLID 343
             ...:..|:|..|: ::.||..:.|.:::||::|::    |:.|.|....   |::......|..
 Frog   210 -KTQITNTDLVKQSLERAWNSTTEEIRQSYGQEYFKKSCNASQTIVPLCK---ANLSLVTDCLEH 270

  Fly   344 AVTRTFPMARYTPVTSSERLQIFLAEHLAPSLYESLYG 381
            |:|...|..||:....::.|.:.|: :...|:.:.|.|
 Frog   271 ALTAAHPRTRYSAGWDAKLLFLPLS-YFPTSVVDFLLG 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8888NP_610724.1 NADB_Rossmann 96..380 CDD:304358 91/295 (31%)
adh_short 96..293 CDD:278532 70/203 (34%)
rdh7.2NP_001107972.1 type2_17beta_HSD-like_SDR_c 30..306 CDD:187665 91/295 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D370032at33208
OrthoFinder 1 1.000 - - FOG0000161
OrthoInspector 1 1.000 - - otm48766
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1882
SonicParanoid 1 1.000 - - X110
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.040

Return to query results.
Submit another query.