Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_014794.3 | Gene: | RPB2 / 854322 | SGDID: | S000005677 | Length: | 1224 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 1231 | Identity: | 438/1231 - (35%) |
---|---|---|---|
Similarity: | 673/1231 - (54%) | Gaps: | 143/1231 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 17 DPGDSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELV-------- 73
Fly 74 TSGADPL---FYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRI- 134
Fly 135 -------------------KRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVR 180
Fly 181 GQEKVILIQEQLSWNKMLTEDFNGVVQCQVT-----SSTHEKKSR---TLVLSKHGKY------- 230
Fly 231 -----YLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDS---KSQNRFGASLIDAYNLKVFTQ 287
Fly 288 QRALEYMGSK---LVVKRFQSATTKTPSEEARELLLTTILAHV-PVDNFNLQMKAIYVSMMVRRV 348
Fly 349 MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHM 413
Fly 414 RAAQITAGLESAISSGNW-TIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRS 477
Fly 478 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPN 542
Fly 543 VFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVE 607
Fly 608 NRRPL------VKQHHL--------DELNRGIRKFDDF-----LLDGLIEYLDVNEENDSFIAWN 653
Fly 654 EDQIEDRT------------------------THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQC 694
Fly 695 AMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIE 759
Fly 760 DALILNKASIDRGYGRCLVYKNSKCTVKRYA---NQTFDRIMGPMKDALTNKVIFKH---DVLDT 818
Fly 819 DGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEE 883
Fly 884 DFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGK 948
Fly 949 TLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPV 1013
Fly 1014 YYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISS 1078
Fly 1079 DAFEVDVCRTCGRMAYCS-------WCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKM 1132 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 432/1214 (36%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 427/1201 (36%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 49/186 (26%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 23/60 (38%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 15/68 (22%) | ||
RPB2 | NP_014794.3 | PRK08565 | 31..1216 | CDD:236291 | 432/1211 (36%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100190 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X610 | |
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.710 |