Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001358898.1 | Gene: | POLR1B / 84172 | HGNCID: | 20454 | Length: | 1181 | Species: | Homo sapiens |
Alignment Length: | 1256 | Identity: | 361/1256 - (28%) |
---|---|---|---|
Similarity: | 556/1256 - (44%) | Gaps: | 219/1256 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 17 DPGDSKDW-SVP----IKPLTEKWKLVPAFLQ---VKGLVKQHIDSFNHFINVDIKKIVKANELV 73
Fly 74 TSGADPLFYLKY---------LDVRVGKPDIDDGFNITKATT-PHECRLRDTTYSAPITVDIEY- 127
Fly 128 TRGTQR--IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVI--LI 188
Fly 189 QEQLSWN-KMLTEDFN----GVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDD-------- 240
Fly 241 -IPIVVIFKALGVVSDQEI-QSLI---GIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVV 300
Fly 301 KRFQSATTKTPSEEARELLLT-TILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYY 364
Fly 365 GNKRLELAGSLLSMMFEDLFKRMNW--ELKTIADK------------NIPKVKAAQFDVVKHMRA 415
Fly 416 AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSL 478
Fly 479 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-VEERPVMIVAFNAGVEDIREVSGNPINN-P 541
Fly 542 NVFLVFINGNVLG-----LTLNHKHLVRNLRYMRRKGRM--GSYVSVHTSYTQRC---------- 589
Fly 590 ---------------------------------------IYIHTDGGRLCRPYVIVENRRPLVKQ 615
Fly 616 HHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQI-EDRTTHLEIEPFTLLGVCAGLV 679
Fly 680 PYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQ 744
Fly 745 NATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKV 809
Fly 810 IFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIER 874
Fly 875 VMVSANAEEDFLIK---ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMN 936
Fly 937 PHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQAELERHGFNYVGKDFFYS 997
Fly 998 GITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLI 1062
Fly 1063 SYGASMLIMERLMISSDAFEVDVCRTCGRMAY-------CSW---------CHFCQSSANVSKIS 1111
Fly 1112 MPYACKLLFQELTSMNVVPKM 1132 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 353/1234 (29%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 351/1218 (29%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 39/173 (23%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 14/116 (12%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 11/40 (28%) | ||
POLR1B | NP_001358898.1 | RNA_pol_B_RPB2 | 38..1179 | CDD:238353 | 351/1218 (29%) |
RNA_pol_Rpb2_2 | 186..375 | CDD:367992 | 42/197 (21%) | ||
RNA_pol_Rpa2_4 | 563..662 | CDD:369122 | 8/98 (8%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |