Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_564341.2 | Gene: | NRPA2 / 839872 | AraportID: | AT1G29940 | Length: | 1178 | Species: | Arabidopsis thaliana |
Alignment Length: | 1289 | Identity: | 350/1289 - (27%) |
---|---|---|---|
Similarity: | 562/1289 - (43%) | Gaps: | 296/1289 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 20 DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLK 84
Fly 85 YLDVRVGKPDIDDGFNI--------------TKATT------PHECRLRDTTYSAPITVDI--EY 127
Fly 128 TRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKV---ILIQ 189
Fly 190 EQLSWNKMLTEDFNG----------VVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDD---- 240
Fly 241 -----IPIVVIFKALGVVSDQEI-QSLIGIDSKSQNR----FGASLI---------DAYNLKVFT 286
Fly 287 QQRALEYMGSKLVVKRFQSATTKTPSEE----ARELLLTTILAHVPVDN--FNLQMKAIYVSMMV 345
Fly 346 RRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNW--------------------- 389
Fly 390 ----ELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRL 450
Fly 451 SYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEV 513
Fly 514 E-----------ERPVMIVAFNAGVEDI--REVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRN 565
Fly 566 LRYMRR-KGRMGS---------YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDE 620
Fly 621 LNRGIRKFDDFLLDGLIE--YLDVN-------EENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCA 676
Fly 677 GLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLP 741
Fly 742 AGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALT 806
Fly 807 NKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAV---------PI 862
Fly 863 SYKGPEPSYIERVMVSANAEE-DFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFND 926
Fly 927 F-GICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF-------GGSK-------VE 976
Fly 977 DIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQP 1041
Fly 1042 TQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCS---------- 1096
Fly 1097 ---------------WCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 345/1273 (27%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 343/1258 (27%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 38/188 (20%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 17/70 (24%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 11/48 (23%) | ||
NRPA2 | NP_564341.2 | RpoB | 13..1174 | CDD:223163 | 346/1271 (27%) |
RNA_pol_B_RPB2 | 22..1169 | CDD:238353 | 344/1260 (27%) | ||
RNA_pol_Rpb2_2 | 202..372 | CDD:282427 | 38/185 (21%) | ||
RNA_pol_Rpa2_4 | 576..628 | CDD:284335 | 11/52 (21%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |