Protein Alignment RpIII128 and NRPB2

DIOPT Version :9

• Sequence 1: NP_523706.1
• Gene: RpIII128 / 36289
• FlyBaseID: FBgn0004463
• Length: 1137
• Species: Drosophila melanogaster
• Sequence 2: NP_193902.1
• Gene: NRPB2 / 828259
• AraportID: AT4G21710
• Length: 1188
• Species: Arabidopsis thaliana
• Alignment Length: 1183
• Identity: 432/1183 - (36%)
• Similarity: 668/1183 - (56%)
• Gaps: 106/1183 - (8%)

  Fly    33 EKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELV-------------TSGADPLFYLK 84
            :.|.::.|:.:.||||:|.:|||:.||...:::||..:..:             :..|:.::.:.
plant    25 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIS 89

  Fly    85 YLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQR-IKRNN---------- 138
            :..:.:.||.:.:....|....|...|||:.|||||:.||:     |:| ||:.:
plant    90 FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVTETQD 149

  Fly   139 ---LLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWN----- 195
               :.||::|:|||.|.|.|...||.:|::|.|||.|.||||::.|.|||::.||::|.|
plant   150 FTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 214

  Fly   196 -KMLTEDFNGVVQCQVTSSTHEKKSRTLVL----------SKHGKY------YLKHNSMTDDIPI 243
             |.....:..|.:.:..:....:...|:.:          ...|:|      |::     .:|||
plant   215 KKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIR-----TEIPI 274

  Fly   244 VVIFKALGVVSDQEIQSLI---GIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQS 305
            :::|:|||.|:|::|...|   ..|::.......||.:|:.::  .|..||:|:|.:       .
plant   275 IIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQ--NQLVALDYIGKR-------G 330

  Fly   306 ATTKTPSEE----ARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGN 366
            ||.....|:    ||::|...:|.||.:.......||.|...::.|::...|.:...||||:|||
plant   331 ATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGN 395

  Fly   367 KRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAA--QFDVVKHMRAAQITAGLESAISSG 429
            |||:|||.||..:|..||:::..::::...|.:...|..  ||.:    :|..||:||:.::::|
plant   396 KRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAI----KAKTITSGLKYSLATG 456

  Fly   430 NWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 494
            ||........||||:|||:||:|.|.|..:.|:||...:..|::.||.|..|||||:||::||||
plant   457 NWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 521

  Fly   495 EACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH 559
            :|||||||||||.:||......|::......|.|:..|:|.:.|  |....:|:||..:|:..:.
plant   522 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVI--PQATKIFVNGMWVGVHRDP 584

  Fly   560 KHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRG 624
            ..||:.||.:||:..:.:.|.|......:.:.|:||.||..||..||:|::.|:|:..:..|.:.
plant   585 DMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQR 649

  Fly   625 IRKFDD----FLLDGLIEYLDVNEENDSFIAWN-----------EDQIEDRTTHLEIEPFTLLGV 674
            ....:|    .:..|.|||:|..||..:.|:..           |:...:..||.||.|..:|||
plant   650 ESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGV 714

  Fly   675 CAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDK 739
            ||.::|:|.||||||||||.||||||||:...|.:.|:|:|.|.|.||..|:|.::.:|..:|.:
plant   715 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 779

  Fly   740 LPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDA 804
            ||||.||.||:..||||:.||::|:|::|||||:.|.|.:::.:...|:......:....|.:.:
plant   780 LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGS 844

  Fly   805 LTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEP 869
            ........:|.||.||:..||.:|..:.::|.|..|  .|.:..||||::.......||.:..|.
plant   845 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQGQSSRYTRRDHSISLRHSET 907

  Fly   870 SYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMI 934
            ..:::|:::.||:....:|:.:|..|||:|||||||||||||..|:...|||||:...|:.||:|
plant   908 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDII 972

  Fly   935 MNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGI 999
            :|||..|||||:|:.:|.:.||.....||....|.|....|::|...|.:.|:...|.:..|:|.
plant   973 VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGH 1037

  Fly  1000 TGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISY 1064
            ||.||.|.|:.||.|||:|||||.||:|:|.|||..:|||||.:||||:||||.|||||||:|::
plant  1038 TGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1102

  Fly  1065 GASMLIMERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQEL 1123
            ||:..:.|||...|||:.|.||..||.:|..:.      |..|::..::.::.:|||||||||||
plant  1103 GAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQEL 1167

  Fly  1124 TSMNVVPKMILEN 1136
            .||.:.|:|:.::
plant  1168 MSMAIAPRMLTKH 1180

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpIII128	NP_523706.1	PRK08565	34..1135	CDD:236291	432/1179 (37%)
		RNA_pol_B_RPB2	47..1133	CDD:238353	427/1164 (37%)
		RNA_pol_Rpb2_2	210..370	CDD:282427	47/182 (26%)
		RNA_pol_Rpb2_4	546..607	CDD:282431	20/60 (33%)
		RNA_pol_Rpb2_5	628..668	CDD:282432	14/54 (26%)
NRPB2	NP_193902.1	PRK08565	27..1179	CDD:236291	432/1178 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0085
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D42570at2759
OrthoFinder	1	1.000	-	-		FOG0000346
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100190
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X610
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.720