Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_498192.2 | Gene: | rpc-2 / 175767 | WormBaseID: | WBGene00017300 | Length: | 1154 | Species: | Caenorhabditis elegans |
Alignment Length: | 1129 | Identity: | 687/1129 - (60%) |
---|---|---|---|
Similarity: | 860/1129 - (76%) | Gaps: | 21/1129 - (1%) |
- Green bases have known domain annotations that are detailed below.
Fly 30 PLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRVGKPD 94
Fly 95 IDDGFNIT-KATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGK 158
Fly 159 SEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNK-MLTEDFNGVVQCQVTSSTHEKKSRTL 222
Fly 223 VLSKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQ 287
Fly 288 QRALEYMGSKLVVKRF--------QSATTKTP--SEEARELLLTTILAHVPVDNFNLQMKAIYVS 342
Fly 343 MMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQF 407
Fly 408 DVVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKV 472
Fly 473 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNP 537
Fly 538 INNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRP 602
Fly 603 YVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIE 667
Fly 668 PFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTI 732
Fly 733 ELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRI 797
Fly 798 MGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVT---------SMNPLQGQSA 853
Fly 854 QVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVE 918
Fly 919 QEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELE 983
Fly 984 RHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSRE 1048
Fly 1049 GGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSKISMP 1113
Fly 1114 YACKLLFQELTSMNVVPKMILENY 1137 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 683/1121 (61%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 673/1106 (61%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 72/169 (43%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 26/60 (43%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 23/39 (59%) | ||
rpc-2 | NP_498192.2 | PRK08565 | 28..1150 | CDD:236291 | 683/1121 (61%) |
RNA_pol_B_RPB2 | 41..1148 | CDD:238353 | 673/1106 (61%) | ||
RNA_pol_Rpb2_4 | 552..613 | CDD:282431 | 26/60 (43%) | ||
RNA_pol_Rpb2_5 | 634..674 | CDD:282432 | 23/39 (59%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C160159256 | |
Domainoid | 1 | 1.000 | 533 | 1.000 | Domainoid score | I135 |
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H6981 | |
Inparanoid | 1 | 1.050 | 1387 | 1.000 | Inparanoid score | I58 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S207 |
OMA | 1 | 1.010 | - | - | QHG54037 | |
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | oto17342 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100190 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR20856 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1190 |
SonicParanoid | 1 | 1.000 | - | - | X610 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
17 | 16.790 |