Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_498047.2 | Gene: | rpb-2 / 175668 | WormBaseID: | WBGene00016140 | Length: | 1194 | Species: | Caenorhabditis elegans |
Alignment Length: | 1162 | Identity: | 430/1162 - (37%) |
---|---|---|---|
Similarity: | 670/1162 - (57%) | Gaps: | 76/1162 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKAN----------ELVTSGADPL-FYLKYLDV 88
Fly 89 RVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIE--YTR---GTQRIKRNNLLIGRMPLML 148
Fly 149 RCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWN-----KMLTEDFNGVVQC 208
Fly 209 QVTSSTHEKKSRTL---VLSKHG---------------KYYLKHNSMTDDIPIVVIFKALGVVSD 255
Fly 256 QEIQSLIGI---DSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARE 317
Fly 318 LLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFED 382
Fly 383 LFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNW-TIKRFKMERAGVTQV 446
Fly 447 LSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 511
Fly 512 EVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRK-GRM 575
Fly 576 GSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRK-----FDDFLLDG 635
Fly 636 LIEYLDVNEENDSFIAWNEDQIE-----DRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCA 695
Fly 696 MGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIED 760
Fly 761 ALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPG 825
Fly 826 EQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKIL 890
Fly 891 LRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGG 955
Fly 956 KAGLLEGKFHYGTAFGGS-KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLK 1019
Fly 1020 HMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVD 1084
Fly 1085 VCRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 430/1160 (37%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 426/1146 (37%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 49/180 (27%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 22/61 (36%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 14/44 (32%) | ||
rpb-2 | NP_498047.2 | PRK08565 | 35..1183 | CDD:236291 | 430/1162 (37%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0085 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100190 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X610 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.720 |