Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002940442.1 | Gene: | polr1b / 100485503 | XenbaseID: | XB-GENE-1008539 | Length: | 1135 | Species: | Xenopus tropicalis |
Alignment Length: | 1216 | Identity: | 349/1216 - (28%) |
---|---|---|---|
Similarity: | 545/1216 - (44%) | Gaps: | 211/1216 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 PGDSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFY 82
Fly 83 --------LKYLDVRVGKPDIDDGFNITKATT--PHECRLRDTTYSAPITVDIEYT-RGTQR--I 134
Fly 135 KRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVI--LIQEQLSWN-K 196
Fly 197 MLTEDFN----GVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFK 248
Fly 249 ALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKV-----FTQQRALEYMGSKLVVKRFQSATT 308
Fly 309 KTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAG 373
Fly 374 SLLSMMFEDLFKRMNWEL--KTIADK------------NIPKVKAAQFDVVKHMRAAQITAGLES 424
Fly 425 AISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWGMLC 487
Fly 488 PSDTPEGEACGLVKNLALMTHITTEVEERPVM-IVAFNAGVEDIREVSGNPINNPNVFLVFINGN 551
Fly 552 VLG-----LTLNHKHLVRNLRYMRRK--------------GRMGSYVSVHTSYTQRCIYIHTDGG 597
Fly 598 RLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTT 662
Fly 663 HLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMV 727
Fly 728 KSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQ 792
Fly 793 TFDRIMGPMKDALTNKVI-FKHD------VLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQG 850
Fly 851 QSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDF----LIKILLRQTRIPEIGDKFSSRHGQKG 911
Fly 912 VTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GG 972
Fly 973 SKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVL 1037
Fly 1038 TRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAY-------C 1095
Fly 1096 SW---------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKM 1132 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 344/1200 (29%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 344/1187 (29%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 35/173 (20%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 12/79 (15%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 8/39 (21%) | ||
polr1b | XP_002940442.1 | RNA_pol_B_RPB2 | 38..1132 | CDD:238353 | 344/1201 (29%) |
RNA_pol_Rpb2_2 | 186..374 | CDD:367992 | 38/196 (19%) | ||
RNA_pol_Rpa2_4 | 563..616 | CDD:369122 | 7/61 (11%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |