Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002937598.2 | Gene: | polr2b / 100380205 | XenbaseID: | XB-GENE-1012874 | Length: | 1174 | Species: | Xenopus tropicalis |
Alignment Length: | 1170 | Identity: | 439/1170 - (37%) |
---|---|---|---|
Similarity: | 684/1170 - (58%) | Gaps: | 95/1170 - (8%) |
- Green bases have known domain annotations that are detailed below.
Fly 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIV--------KANELVTSG---ADPLFYLKYLDV 88
Fly 89 RVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYT---RGTQRI--KRNNLLIGRMPLML 148
Fly 149 RCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLT-----EDFNGVVQC 208
Fly 209 QVTSSTHEKKSR------TLVLSKHGK---------------YYLKHNSMTDDIPIVVIFKALGV 252
Fly 253 VSDQEIQSLIGI---DSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEE 314
Fly 315 ARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMM 379
Fly 380 FEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNW-TIKRFKMERAGV 443
Fly 444 TQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTH 508
Fly 509 ITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRK- 572
Fly 573 GRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD-----DFL 632
Fly 633 LDGLIEYLDVNEENDSFIAWNEDQIEDR-------TTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690
Fly 691 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSG 755
Fly 756 YDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR---IMGPMKDALTNKVIFKHDVLD 817
Fly 818 TDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPIS--YKGPEPSYIERVMVSAN 880
Fly 881 AEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMT 945
Fly 946 VGKTLELLGGKAGLLEGKFHYGTAFGGS-KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIY 1009
Fly 1010 SGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERL 1074
Fly 1075 MISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMI 1133
Fly 1134 1133 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 439/1170 (38%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 435/1156 (38%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 53/183 (29%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 23/61 (38%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 13/51 (25%) | ||
polr2b | XP_002937598.2 | PRK08565 | 27..1172 | CDD:236291 | 438/1168 (38%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X610 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.920 |