Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001121521.1 | Gene: | polr3b / 100158643 | XenbaseID: | XB-GENE-5799940 | Length: | 1134 | Species: | Xenopus tropicalis |
Alignment Length: | 1116 | Identity: | 765/1116 - (68%) |
---|---|---|---|
Similarity: | 925/1116 - (82%) | Gaps: | 7/1116 - (0%) |
- Green bases have known domain annotations that are detailed below.
Fly 27 PIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLDVRVG 91
Fly 92 KPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALT 156
Fly 157 GKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSR 220
Fly 221 TLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVF 285
Fly 286 TQQRALEYMGSKLVVKRF--QSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRV 348
Fly 349 MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHM 413
Fly 414 RAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSL 478
Fly 479 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNV 543
Fly 544 FLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVEN 608
Fly 609 RRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLG 673
Fly 674 VCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFD 738
Fly 739 KLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKD 803
Fly 804 ALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSA--QVPYTAVPISYKG 866
Fly 867 PEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICP 931
Fly 932 DMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFY 996
Fly 997 SGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCL 1061
Fly 1062 ISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSKISMPYACKLLFQELTSM 1126
Fly 1127 NVVPKMILENY 1137 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 761/1105 (69%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 750/1090 (69%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 83/161 (52%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 32/60 (53%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 24/39 (62%) | ||
polr3b | NP_001121521.1 | RNA_pol_B_RPB2 | 39..1128 | CDD:238353 | 750/1090 (69%) |
RNA_pol_Rpb2_4 | 540..601 | CDD:377386 | 32/60 (53%) | ||
RNA_pol_Rpb2_5 | 622..662 | CDD:367996 | 24/39 (62%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 601 | 1.000 | Domainoid score | I199 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H6981 | |
Inparanoid | 1 | 1.050 | 1573 | 1.000 | Inparanoid score | I87 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 1 | 1.000 | - | - | oto104462 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR20856 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X610 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
8 | 8.160 |