Sequence 1: | NP_523706.1 | Gene: | RpIII128 / 36289 | FlyBaseID: | FBgn0004463 | Length: | 1137 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001019632.2 | Gene: | polr2b / 100149268 | ZFINID: | ZDB-GENE-041008-1 | Length: | 1174 | Species: | Danio rerio |
Alignment Length: | 1164 | Identity: | 438/1164 - (37%) |
---|---|---|---|
Similarity: | 686/1164 - (58%) | Gaps: | 83/1164 - (7%) |
- Green bases have known domain annotations that are detailed below.
Fly 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIV--------KANELVTSG---ADPLFYLKYLDV 88
Fly 89 RVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYT-----RGTQRIKRNNLLIGRMPLML 148
Fly 149 RCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLT---ED----FNGVV 206
Fly 207 QCQVTSSTHEKKSRTLVLS--KHGKYYLKHNS-----------MTDDIPIVVIFKALGVVSDQEI 258
Fly 259 QSLIGI---DSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLL 320
Fly 321 TTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFK 385
Fly 386 RMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNW-TIKRFKMERAGVTQVLSR 449
Fly 450 LSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVE 514
Fly 515 ERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRK-GRMGSY 578
Fly 579 VSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD-----DFLLDGLIE 638
Fly 639 YLDVNEENDSFIAWNEDQIEDR-------TTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM 696
Fly 697 GKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDA 761
Fly 762 LILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR---IMGPMKDALTNKVIFKHDVLDTDGIVA 823
Fly 824 PGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPIS--YKGPEPSYIERVMVSANAEEDFL 886
Fly 887 IKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLE 951
Fly 952 LLGGKAGLLEGKFHYGTAFGGS-KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYY 1015
Fly 1016 QKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDA 1080
Fly 1081 FEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMI 1133 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RpIII128 | NP_523706.1 | PRK08565 | 34..1135 | CDD:236291 | 438/1164 (38%) |
RNA_pol_B_RPB2 | 47..1133 | CDD:238353 | 434/1150 (38%) | ||
RNA_pol_Rpb2_2 | 210..370 | CDD:282427 | 49/175 (28%) | ||
RNA_pol_Rpb2_4 | 546..607 | CDD:282431 | 23/61 (38%) | ||
RNA_pol_Rpb2_5 | 628..668 | CDD:282432 | 13/51 (25%) | ||
polr2b | NP_001019632.2 | PRK08565 | 27..1172 | CDD:236291 | 437/1162 (38%) |
RNA_pol_B_RPB2 | 39..1172 | CDD:238353 | 434/1150 (38%) | ||
RNA_pol_Rpb2_4 | 567..629 | CDD:282431 | 23/61 (38%) | ||
RNA_pol_Rpb2_5 | 653..700 | CDD:282432 | 13/46 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D42570at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000346 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100190 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X610 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.820 |