DRSC/TRiP Functional Genomics Resources

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Protein Alignment 128up and RBG2

DIOPT Version :9

Sequence 1:NP_536733.1 Gene:128up / 36288 FlyBaseID:FBgn0010339 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_011689.1 Gene:RBG2 / 853083 SGDID:S000003405 Length:368 Species:Saccharomyces cerevisiae


Alignment Length:367 Identity:194/367 - (52%)
Similarity:260/367 - (70%) Gaps:4/367 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ILEKISAIESEMARTQKNKATSAHLGLLKAKLAKLRRELISPKGGGGGTGEAGFEVAKTGDARVG 68
            |::||.|||.|||||||||||..||||||.|||:.|::|::.:.|.||.|.:||||||:|||||.
Yeast     3 IIDKIKAIEEEMARTQKNKATEHHLGLLKGKLARYRQQLLADEAGSGGGGGSGFEVAKSGDARVV 67

  Fly    69 FVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGR 133
            .:|:||||||:||..:....||:|.|.|||||:|||.:||:||:||::||||||.||..||||||
Yeast    68 LIGYPSVGKSSLLGKITTTKSEIAHYAFTTLTSVPGVLKYQGAEIQIVDLPGIIYGASQGKGRGR 132

  Fly   134 QVIAVARTCNLIFMVLDCLKPLGHKKLLEHELEGFGIRLNKKPPNIYYKRKDKGGINLN-SMVPQ 197
            ||:|.|||.:|:.||||..|....:..||.|||..||||||:.||||||:|:.||:.:. :..|:
Yeast   133 QVVATARTADLVLMVLDATKSEHQRASLEKELENVGIRLNKEKPNIYYKKKETGGVKVTFTSPPK 197

  Fly   198 SELDTDLVKTILSEYKIHNADITLRYD-ATSDDLIDVI-EGNRIYIPCIYLLNKIDQISIEELDV 260
            :.|....:|.||.:|:||||::.:|.| .|.||.|||| |.:|.|:.|:|:.||||.:|:||:|.
Yeast   198 TNLTEQAIKMILRDYRIHNAEVLVRDDQCTIDDFIDVINEQHRNYVKCLYVYNKIDAVSLEEVDK 262

  Fly   261 IYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKGQLPDYNSPVVLHNERTSIEDFCNKL 325
            :.:.|:.|.:|........|::|.:|..|.|.|:|||.:|..|.::.|:|:.|..| |.|.|:.:
Yeast   263 LAREPNTVVMSCEMDLGLQDVVEEIWYQLNLSRVYTKKRGVRPVFDDPLVVRNNST-IGDLCHGI 326

  Fly   326 HRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVVQIVKK 367
            ||....:||||||||||.||.|||.|:.|.::|||||.:..|
Yeast   327 HRDFKDKFKYALVWGSSAKHSPQKCGLNHRIDDEDVVSLFAK 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
128upNP_536733.1 Rbg1 1..367 CDD:224085 193/365 (53%)
RBG2NP_011689.1 Rbg1 1..368 CDD:224085 193/365 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 86 1.000 Domainoid score I1886
eggNOG 1 0.900 - - E1_COG1163
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60797
OrthoFinder 1 1.000 - - FOG0001080
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

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